Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PCDHA1Q9Y5I3 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC25.19■■□□□ 1.62
PCDHA1Q9Y5I3 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC25.19■■□□□ 1.62
PCDHA1Q9Y5I3 AC087623.3-201ENST00000607047 1098 ntBASIC25.19■■□□□ 1.62
PCDHA1Q9Y5I3 AC105233.4-201ENST00000642045 216 ntBASIC25.19■■□□□ 1.62
PCDHA1Q9Y5I3 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
PCDHA1Q9Y5I3 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC25.19■■□□□ 1.62
PCDHA1Q9Y5I3 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHA1Q9Y5I3 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHA1Q9Y5I3 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHA1Q9Y5I3 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHA1Q9Y5I3 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHA1Q9Y5I3 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHA1Q9Y5I3 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC25.18■■□□□ 1.62
PCDHA1Q9Y5I3 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC25.18■■□□□ 1.62
PCDHA1Q9Y5I3 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
PCDHA1Q9Y5I3 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHA1Q9Y5I3 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHA1Q9Y5I3 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PCDHA1Q9Y5I3 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PCDHA1Q9Y5I3 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PCDHA1Q9Y5I3 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC25.17■■□□□ 1.62
PCDHA1Q9Y5I3 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC25.17■■□□□ 1.62
PCDHA1Q9Y5I3 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
PCDHA1Q9Y5I3 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PCDHA1Q9Y5I3 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHA1Q9Y5I3 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHA1Q9Y5I3 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC25.16■■□□□ 1.62
PCDHA1Q9Y5I3 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC25.16■■□□□ 1.62
PCDHA1Q9Y5I3 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC25.16■■□□□ 1.62
PCDHA1Q9Y5I3 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC25.16■■□□□ 1.62
PCDHA1Q9Y5I3 PLD4-205ENST00000553861 667 ntTSL 2 BASIC25.16■■□□□ 1.62
PCDHA1Q9Y5I3 MIR5787-201ENST00000611784 55 ntBASIC25.16■■□□□ 1.62
PCDHA1Q9Y5I3 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC25.16■■□□□ 1.62
PCDHA1Q9Y5I3 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHA1Q9Y5I3 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHA1Q9Y5I3 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC25.16■■□□□ 1.62
PCDHA1Q9Y5I3 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHA1Q9Y5I3 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC25.15■■□□□ 1.62
PCDHA1Q9Y5I3 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHA1Q9Y5I3 LINC01960-201ENST00000563759 1884 ntBASIC25.15■■□□□ 1.62
PCDHA1Q9Y5I3 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHA1Q9Y5I3 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHA1Q9Y5I3 DUSP8P5-201ENST00000422884 1815 ntBASIC25.15■■□□□ 1.62
PCDHA1Q9Y5I3 AC027612.3-201ENST00000413684 1047 ntBASIC25.15■■□□□ 1.62
PCDHA1Q9Y5I3 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHA1Q9Y5I3 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC25.14■■□□□ 1.62
PCDHA1Q9Y5I3 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC25.14■■□□□ 1.62
PCDHA1Q9Y5I3 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.62
PCDHA1Q9Y5I3 YBX1P1-201ENST00000445822 960 ntBASIC25.14■■□□□ 1.62
PCDHA1Q9Y5I3 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC25.14■■□□□ 1.62
PCDHA1Q9Y5I3 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
PCDHA1Q9Y5I3 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC25.14■■□□□ 1.62
PCDHA1Q9Y5I3 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC25.14■■□□□ 1.62
PCDHA1Q9Y5I3 CASK-201ENST00000378154 2494 ntTSL 5 BASIC25.14■■□□□ 1.61
PCDHA1Q9Y5I3 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
PCDHA1Q9Y5I3 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC25.14■■□□□ 1.61
PCDHA1Q9Y5I3 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.61
PCDHA1Q9Y5I3 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
PCDHA1Q9Y5I3 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHA1Q9Y5I3 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHA1Q9Y5I3 OXCT2P1-201ENST00000447263 1535 ntBASIC25.13■■□□□ 1.61
PCDHA1Q9Y5I3 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHA1Q9Y5I3 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHA1Q9Y5I3 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC25.13■■□□□ 1.61
PCDHA1Q9Y5I3 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHA1Q9Y5I3 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHA1Q9Y5I3 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC25.13■■□□□ 1.61
PCDHA1Q9Y5I3 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC25.13■■□□□ 1.61
PCDHA1Q9Y5I3 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHA1Q9Y5I3 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC25.13■■□□□ 1.61
PCDHA1Q9Y5I3 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHA1Q9Y5I3 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC25.13■■□□□ 1.61
PCDHA1Q9Y5I3 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHA1Q9Y5I3 MPST-204ENST00000404393 1329 ntTSL 5 BASIC25.12■■□□□ 1.61
PCDHA1Q9Y5I3 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHA1Q9Y5I3 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC25.12■■□□□ 1.61
PCDHA1Q9Y5I3 GCA-201ENST00000233612 1694 ntTSL 2 BASIC25.12■■□□□ 1.61
PCDHA1Q9Y5I3 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
PCDHA1Q9Y5I3 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC25.11■■□□□ 1.61
PCDHA1Q9Y5I3 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PCDHA1Q9Y5I3 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PCDHA1Q9Y5I3 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC25.11■■□□□ 1.61
PCDHA1Q9Y5I3 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PCDHA1Q9Y5I3 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PCDHA1Q9Y5I3 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
PCDHA1Q9Y5I3 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC25.11■■□□□ 1.61
PCDHA1Q9Y5I3 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
PCDHA1Q9Y5I3 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC25.11■■□□□ 1.61
PCDHA1Q9Y5I3 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC25.1■■□□□ 1.61
PCDHA1Q9Y5I3 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHA1Q9Y5I3 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHA1Q9Y5I3 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC25.1■■□□□ 1.61
PCDHA1Q9Y5I3 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC25.1■■□□□ 1.61
PCDHA1Q9Y5I3 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC25.1■■□□□ 1.61
PCDHA1Q9Y5I3 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHA1Q9Y5I3 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHA1Q9Y5I3 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
PCDHA1Q9Y5I3 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHA1Q9Y5I3 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms