Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VPS9D1Q9Y2B5 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VPS9D1Q9Y2B5 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS9D1Q9Y2B5 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VPS9D1Q9Y2B5 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.75■■□□□ 1.07
VPS9D1Q9Y2B5 AC068587.7-201ENST00000641602 218 ntBASIC21.75■■□□□ 1.07
VPS9D1Q9Y2B5 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS9D1Q9Y2B5 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS9D1Q9Y2B5 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS9D1Q9Y2B5 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS9D1Q9Y2B5 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VPS9D1Q9Y2B5 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
VPS9D1Q9Y2B5 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS9D1Q9Y2B5 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS9D1Q9Y2B5 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS9D1Q9Y2B5 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VPS9D1Q9Y2B5 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.74■■□□□ 1.07
VPS9D1Q9Y2B5 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
VPS9D1Q9Y2B5 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS9D1Q9Y2B5 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.74■■□□□ 1.07
VPS9D1Q9Y2B5 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VPS9D1Q9Y2B5 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VPS9D1Q9Y2B5 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VPS9D1Q9Y2B5 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.74■■□□□ 1.07
VPS9D1Q9Y2B5 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
VPS9D1Q9Y2B5 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS9D1Q9Y2B5 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS9D1Q9Y2B5 SYT6-210ENST00000641643 1587 ntBASIC21.74■■□□□ 1.07
VPS9D1Q9Y2B5 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
VPS9D1Q9Y2B5 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS9D1Q9Y2B5 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
VPS9D1Q9Y2B5 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS9D1Q9Y2B5 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.73■■□□□ 1.07
VPS9D1Q9Y2B5 AC131281.2-201ENST00000520478 145 ntBASIC21.73■■□□□ 1.07
VPS9D1Q9Y2B5 MIR4466-201ENST00000606121 54 ntBASIC21.73■■□□□ 1.07
VPS9D1Q9Y2B5 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.73■■□□□ 1.07
VPS9D1Q9Y2B5 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.73■■□□□ 1.07
VPS9D1Q9Y2B5 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS9D1Q9Y2B5 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS9D1Q9Y2B5 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
VPS9D1Q9Y2B5 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VPS9D1Q9Y2B5 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
VPS9D1Q9Y2B5 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS9D1Q9Y2B5 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS9D1Q9Y2B5 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.72■■□□□ 1.07
VPS9D1Q9Y2B5 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
VPS9D1Q9Y2B5 AC092053.2-201ENST00000640557 1818 ntBASIC21.72■■□□□ 1.07
VPS9D1Q9Y2B5 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.72■■□□□ 1.07
VPS9D1Q9Y2B5 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
VPS9D1Q9Y2B5 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS9D1Q9Y2B5 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS9D1Q9Y2B5 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS9D1Q9Y2B5 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS9D1Q9Y2B5 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.71■■□□□ 1.07
VPS9D1Q9Y2B5 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS9D1Q9Y2B5 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS9D1Q9Y2B5 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS9D1Q9Y2B5 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.71■■□□□ 1.07
VPS9D1Q9Y2B5 OR2I1P-207ENST00000453522 948 ntBASIC21.71■■□□□ 1.07
VPS9D1Q9Y2B5 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS9D1Q9Y2B5 AL031602.1-201ENST00000633169 911 ntBASIC21.71■■□□□ 1.07
VPS9D1Q9Y2B5 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS9D1Q9Y2B5 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VPS9D1Q9Y2B5 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS9D1Q9Y2B5 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS9D1Q9Y2B5 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS9D1Q9Y2B5 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS9D1Q9Y2B5 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.7■■□□□ 1.07
VPS9D1Q9Y2B5 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS9D1Q9Y2B5 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.7■■□□□ 1.06
VPS9D1Q9Y2B5 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS9D1Q9Y2B5 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.7■■□□□ 1.06
VPS9D1Q9Y2B5 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.7■■□□□ 1.06
VPS9D1Q9Y2B5 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.7■■□□□ 1.06
VPS9D1Q9Y2B5 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.7■■□□□ 1.06
VPS9D1Q9Y2B5 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS9D1Q9Y2B5 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.7■■□□□ 1.06
VPS9D1Q9Y2B5 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS9D1Q9Y2B5 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS9D1Q9Y2B5 AC139530.1-201ENST00000575312 1977 ntBASIC21.7■■□□□ 1.06
VPS9D1Q9Y2B5 AC080038.3-201ENST00000623346 1952 ntBASIC21.7■■□□□ 1.06
VPS9D1Q9Y2B5 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.7■■□□□ 1.06
VPS9D1Q9Y2B5 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS9D1Q9Y2B5 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 AC137767.1-201ENST00000602918 1920 ntBASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 AC011298.3-201ENST00000615796 283 ntBASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms