Protein–RNA interactions for Protein: Q9H9S0

NANOG, Homeobox protein NANOG, humanhuman

Predictions only

Length 305 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NANOGQ9H9S0 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
NANOGQ9H9S0 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NANOGQ9H9S0 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
NANOGQ9H9S0 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NANOGQ9H9S0 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.75■□□□□ 0.91
NANOGQ9H9S0 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NANOGQ9H9S0 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
NANOGQ9H9S0 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.74■□□□□ 0.91
NANOGQ9H9S0 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.74■□□□□ 0.91
NANOGQ9H9S0 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.74■□□□□ 0.91
NANOGQ9H9S0 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NANOGQ9H9S0 DUX4L4-201ENST00000566884 1269 ntBASIC20.74■□□□□ 0.91
NANOGQ9H9S0 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.74■□□□□ 0.91
NANOGQ9H9S0 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NANOGQ9H9S0 AC009086.3-201ENST00000623486 1008 ntBASIC20.74■□□□□ 0.91
NANOGQ9H9S0 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NANOGQ9H9S0 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NANOGQ9H9S0 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.74■□□□□ 0.91
NANOGQ9H9S0 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
NANOGQ9H9S0 AC005703.6-201ENST00000623265 1329 ntBASIC20.74■□□□□ 0.91
NANOGQ9H9S0 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NANOGQ9H9S0 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NANOGQ9H9S0 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NANOGQ9H9S0 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NANOGQ9H9S0 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.74■□□□□ 0.91
NANOGQ9H9S0 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NANOGQ9H9S0 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NANOGQ9H9S0 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NANOGQ9H9S0 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NANOGQ9H9S0 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NANOGQ9H9S0 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
NANOGQ9H9S0 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.73■□□□□ 0.91
NANOGQ9H9S0 AC103834.1-201ENST00000520383 144 ntBASIC20.73■□□□□ 0.91
NANOGQ9H9S0 AC137630.3-201ENST00000607245 391 ntBASIC20.73■□□□□ 0.91
NANOGQ9H9S0 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
NANOGQ9H9S0 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NANOGQ9H9S0 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NANOGQ9H9S0 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
NANOGQ9H9S0 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NANOGQ9H9S0 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
NANOGQ9H9S0 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NANOGQ9H9S0 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NANOGQ9H9S0 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
NANOGQ9H9S0 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NANOGQ9H9S0 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
NANOGQ9H9S0 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NANOGQ9H9S0 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NANOGQ9H9S0 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
NANOGQ9H9S0 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.72■□□□□ 0.91
NANOGQ9H9S0 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.72■□□□□ 0.91
NANOGQ9H9S0 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.72■□□□□ 0.91
NANOGQ9H9S0 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
NANOGQ9H9S0 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NANOGQ9H9S0 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.72■□□□□ 0.91
NANOGQ9H9S0 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.72■□□□□ 0.91
NANOGQ9H9S0 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NANOGQ9H9S0 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
NANOGQ9H9S0 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.71■□□□□ 0.91
NANOGQ9H9S0 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
NANOGQ9H9S0 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NANOGQ9H9S0 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NANOGQ9H9S0 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
NANOGQ9H9S0 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
NANOGQ9H9S0 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NANOGQ9H9S0 MIR6722-201ENST00000617286 78 ntBASIC20.71■□□□□ 0.91
NANOGQ9H9S0 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.71■□□□□ 0.91
NANOGQ9H9S0 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.71■□□□□ 0.91
NANOGQ9H9S0 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.71■□□□□ 0.91
NANOGQ9H9S0 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
NANOGQ9H9S0 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NANOGQ9H9S0 PKD1P6-201ENST00000343738 4769 ntBASIC20.71■□□□□ 0.91
NANOGQ9H9S0 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.91
NANOGQ9H9S0 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.7■□□□□ 0.9
NANOGQ9H9S0 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
NANOGQ9H9S0 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
NANOGQ9H9S0 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.7■□□□□ 0.9
NANOGQ9H9S0 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.7■□□□□ 0.9
NANOGQ9H9S0 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
NANOGQ9H9S0 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.7■□□□□ 0.9
NANOGQ9H9S0 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
NANOGQ9H9S0 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NANOGQ9H9S0 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NANOGQ9H9S0 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NANOGQ9H9S0 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NANOGQ9H9S0 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NANOGQ9H9S0 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NANOGQ9H9S0 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NANOGQ9H9S0 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NANOGQ9H9S0 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NANOGQ9H9S0 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.69■□□□□ 0.9
NANOGQ9H9S0 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.69■□□□□ 0.9
NANOGQ9H9S0 AC005229.4-201ENST00000610085 2198 ntBASIC20.69■□□□□ 0.9
NANOGQ9H9S0 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.69■□□□□ 0.9
NANOGQ9H9S0 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
NANOGQ9H9S0 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NANOGQ9H9S0 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NANOGQ9H9S0 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NANOGQ9H9S0 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.69■□□□□ 0.9
NANOGQ9H9S0 AC103724.3-201ENST00000564481 992 ntBASIC20.69■□□□□ 0.9
NANOGQ9H9S0 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 126.7 ms