Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
CDH6P55285 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
CDH6P55285 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
CDH6P55285 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC22.85■■□□□ 1.25
CDH6P55285 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
CDH6P55285 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CDH6P55285 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
CDH6P55285 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC22.85■■□□□ 1.25
CDH6P55285 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CDH6P55285 pRNA.6-201ENST00000610482 90 ntBASIC22.85■■□□□ 1.25
CDH6P55285 pRNA.5-201ENST00000612139 90 ntBASIC22.85■■□□□ 1.25
CDH6P55285 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
CDH6P55285 pRNA.11-201ENST00000618423 90 ntBASIC22.85■■□□□ 1.25
CDH6P55285 pRNA.13-201ENST00000619112 90 ntBASIC22.85■■□□□ 1.25
CDH6P55285 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC22.85■■□□□ 1.25
CDH6P55285 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CDH6P55285 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC22.85■■□□□ 1.25
CDH6P55285 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
CDH6P55285 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CDH6P55285 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CDH6P55285 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CDH6P55285 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC22.85■■□□□ 1.25
CDH6P55285 ECEL1P1-201ENST00000373592 1742 ntBASIC22.85■■□□□ 1.25
CDH6P55285 AC242852.2-201ENST00000615738 1807 ntBASIC22.85■■□□□ 1.25
CDH6P55285 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CDH6P55285 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC22.85■■□□□ 1.25
CDH6P55285 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC22.84■■□□□ 1.25
CDH6P55285 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC22.84■■□□□ 1.25
CDH6P55285 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC22.84■■□□□ 1.25
CDH6P55285 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CDH6P55285 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC22.84■■□□□ 1.25
CDH6P55285 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CDH6P55285 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC22.84■■□□□ 1.25
CDH6P55285 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CDH6P55285 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CDH6P55285 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
CDH6P55285 LSR-203ENST00000360798 1963 ntTSL 2 BASIC22.83■■□□□ 1.25
CDH6P55285 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
CDH6P55285 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
CDH6P55285 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
CDH6P55285 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
CDH6P55285 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC22.83■■□□□ 1.25
CDH6P55285 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC22.83■■□□□ 1.25
CDH6P55285 AC131212.1-201ENST00000613771 668 ntBASIC22.83■■□□□ 1.25
CDH6P55285 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC22.83■■□□□ 1.25
CDH6P55285 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC22.83■■□□□ 1.24
CDH6P55285 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
CDH6P55285 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
CDH6P55285 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC22.83■■□□□ 1.24
CDH6P55285 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CDH6P55285 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC22.82■■□□□ 1.24
CDH6P55285 AC080038.3-201ENST00000623346 1952 ntBASIC22.82■■□□□ 1.24
CDH6P55285 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC22.82■■□□□ 1.24
CDH6P55285 LINC00526-201ENST00000581067 1875 ntBASIC22.82■■□□□ 1.24
CDH6P55285 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC22.82■■□□□ 1.24
CDH6P55285 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC22.82■■□□□ 1.24
CDH6P55285 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
CDH6P55285 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC22.82■■□□□ 1.24
CDH6P55285 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC22.82■■□□□ 1.24
CDH6P55285 STK25-234ENST00000535007 2459 ntTSL 2 BASIC22.82■■□□□ 1.24
CDH6P55285 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CDH6P55285 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CDH6P55285 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC22.81■■□□□ 1.24
CDH6P55285 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC22.81■■□□□ 1.24
CDH6P55285 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CDH6P55285 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
CDH6P55285 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
CDH6P55285 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC22.81■■□□□ 1.24
CDH6P55285 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC22.81■■□□□ 1.24
CDH6P55285 MIR4466-201ENST00000606121 54 ntBASIC22.81■■□□□ 1.24
CDH6P55285 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC22.81■■□□□ 1.24
CDH6P55285 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC22.81■■□□□ 1.24
CDH6P55285 AC133637.1-201ENST00000624115 1537 ntBASIC22.81■■□□□ 1.24
CDH6P55285 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
CDH6P55285 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
CDH6P55285 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
CDH6P55285 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC22.8■■□□□ 1.24
CDH6P55285 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC22.8■■□□□ 1.24
CDH6P55285 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC22.8■■□□□ 1.24
CDH6P55285 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
CDH6P55285 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.24
CDH6P55285 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC22.8■■□□□ 1.24
CDH6P55285 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC22.8■■□□□ 1.24
CDH6P55285 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
CDH6P55285 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
CDH6P55285 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC22.8■■□□□ 1.24
CDH6P55285 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CDH6P55285 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
CDH6P55285 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC22.8■■□□□ 1.24
CDH6P55285 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CDH6P55285 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CDH6P55285 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CDH6P55285 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC22.79■■□□□ 1.24
CDH6P55285 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC22.79■■□□□ 1.24
CDH6P55285 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC22.79■■□□□ 1.24
CDH6P55285 AC131281.2-201ENST00000520478 145 ntBASIC22.79■■□□□ 1.24
CDH6P55285 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC22.79■■□□□ 1.24
CDH6P55285 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC22.79■■□□□ 1.24
CDH6P55285 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
CDH6P55285 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC22.79■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms