Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
ZNF540Q8NDQ6 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF540Q8NDQ6 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
ZNF540Q8NDQ6 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF540Q8NDQ6 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF540Q8NDQ6 AC009299.2-201ENST00000482477 511 ntBASIC20.33■□□□□ 0.85
ZNF540Q8NDQ6 PVT1_1.1-201ENST00000615125 194 ntBASIC20.33■□□□□ 0.85
ZNF540Q8NDQ6 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
ZNF540Q8NDQ6 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF540Q8NDQ6 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF540Q8NDQ6 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF540Q8NDQ6 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF540Q8NDQ6 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF540Q8NDQ6 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.32■□□□□ 0.84
ZNF540Q8NDQ6 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF540Q8NDQ6 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF540Q8NDQ6 RPS2P7-201ENST00000447334 885 ntBASIC20.32■□□□□ 0.84
ZNF540Q8NDQ6 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
ZNF540Q8NDQ6 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF540Q8NDQ6 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF540Q8NDQ6 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.32■□□□□ 0.84
ZNF540Q8NDQ6 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF540Q8NDQ6 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF540Q8NDQ6 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF540Q8NDQ6 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
ZNF540Q8NDQ6 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF540Q8NDQ6 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF540Q8NDQ6 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
ZNF540Q8NDQ6 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
ZNF540Q8NDQ6 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF540Q8NDQ6 AL031848.2-201ENST00000607670 837 ntBASIC20.31■□□□□ 0.84
ZNF540Q8NDQ6 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
ZNF540Q8NDQ6 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF540Q8NDQ6 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF540Q8NDQ6 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF540Q8NDQ6 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF540Q8NDQ6 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF540Q8NDQ6 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF540Q8NDQ6 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF540Q8NDQ6 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.3■□□□□ 0.84
ZNF540Q8NDQ6 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.3■□□□□ 0.84
ZNF540Q8NDQ6 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.3■□□□□ 0.84
ZNF540Q8NDQ6 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF540Q8NDQ6 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF540Q8NDQ6 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF540Q8NDQ6 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF540Q8NDQ6 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
ZNF540Q8NDQ6 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF540Q8NDQ6 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.3■□□□□ 0.84
ZNF540Q8NDQ6 ALDH1A3-203ENST00000557963 1670 ntBASIC20.29■□□□□ 0.84
ZNF540Q8NDQ6 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF540Q8NDQ6 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF540Q8NDQ6 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF540Q8NDQ6 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF540Q8NDQ6 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
ZNF540Q8NDQ6 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
ZNF540Q8NDQ6 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF540Q8NDQ6 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF540Q8NDQ6 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF540Q8NDQ6 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF540Q8NDQ6 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
ZNF540Q8NDQ6 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
ZNF540Q8NDQ6 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
ZNF540Q8NDQ6 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF540Q8NDQ6 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF540Q8NDQ6 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
ZNF540Q8NDQ6 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF540Q8NDQ6 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
ZNF540Q8NDQ6 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF540Q8NDQ6 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.28■□□□□ 0.84
ZNF540Q8NDQ6 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
ZNF540Q8NDQ6 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
ZNF540Q8NDQ6 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF540Q8NDQ6 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF540Q8NDQ6 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF540Q8NDQ6 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
ZNF540Q8NDQ6 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF540Q8NDQ6 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF540Q8NDQ6 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.28■□□□□ 0.84
ZNF540Q8NDQ6 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.28■□□□□ 0.84
ZNF540Q8NDQ6 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.28■□□□□ 0.84
ZNF540Q8NDQ6 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.28■□□□□ 0.84
ZNF540Q8NDQ6 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.28■□□□□ 0.84
ZNF540Q8NDQ6 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF540Q8NDQ6 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF540Q8NDQ6 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.27■□□□□ 0.84
ZNF540Q8NDQ6 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF540Q8NDQ6 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF540Q8NDQ6 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.27■□□□□ 0.84
ZNF540Q8NDQ6 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF540Q8NDQ6 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF540Q8NDQ6 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.27■□□□□ 0.84
ZNF540Q8NDQ6 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.27■□□□□ 0.84
ZNF540Q8NDQ6 AC022616.5-201ENST00000518796 181 ntBASIC20.27■□□□□ 0.84
ZNF540Q8NDQ6 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.27■□□□□ 0.84
ZNF540Q8NDQ6 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF540Q8NDQ6 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF540Q8NDQ6 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
ZNF540Q8NDQ6 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
ZNF540Q8NDQ6 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms