Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
PKNOX1P55347 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.58■■□□□ 1.05
PKNOX1P55347 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
PKNOX1P55347 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.58■■□□□ 1.05
PKNOX1P55347 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PKNOX1P55347 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PKNOX1P55347 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
PKNOX1P55347 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
PKNOX1P55347 FP325331.1-202ENST00000623531 1380 ntBASIC21.58■■□□□ 1.04
PKNOX1P55347 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PKNOX1P55347 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.04
PKNOX1P55347 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PKNOX1P55347 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.57■■□□□ 1.04
PKNOX1P55347 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.57■■□□□ 1.04
PKNOX1P55347 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
PKNOX1P55347 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
PKNOX1P55347 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PKNOX1P55347 PKD1P6-201ENST00000343738 4769 ntBASIC21.57■■□□□ 1.04
PKNOX1P55347 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.57■■□□□ 1.04
PKNOX1P55347 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.57■■□□□ 1.04
PKNOX1P55347 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.56■■□□□ 1.04
PKNOX1P55347 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
PKNOX1P55347 LINC01529-204ENST00000636474 1715 ntBASIC21.56■■□□□ 1.04
PKNOX1P55347 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
PKNOX1P55347 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.56■■□□□ 1.04
PKNOX1P55347 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PKNOX1P55347 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.56■■□□□ 1.04
PKNOX1P55347 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PKNOX1P55347 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.56■■□□□ 1.04
PKNOX1P55347 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PKNOX1P55347 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PKNOX1P55347 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PKNOX1P55347 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.56■■□□□ 1.04
PKNOX1P55347 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PKNOX1P55347 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PKNOX1P55347 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.55■■□□□ 1.04
PKNOX1P55347 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.55■■□□□ 1.04
PKNOX1P55347 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PKNOX1P55347 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
PKNOX1P55347 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.55■■□□□ 1.04
PKNOX1P55347 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.55■■□□□ 1.04
PKNOX1P55347 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PKNOX1P55347 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
PKNOX1P55347 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
PKNOX1P55347 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
PKNOX1P55347 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PKNOX1P55347 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PKNOX1P55347 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PKNOX1P55347 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
PKNOX1P55347 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
PKNOX1P55347 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
PKNOX1P55347 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PKNOX1P55347 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.55■■□□□ 1.04
PKNOX1P55347 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.55■■□□□ 1.04
PKNOX1P55347 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PKNOX1P55347 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.55■■□□□ 1.04
PKNOX1P55347 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PKNOX1P55347 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PKNOX1P55347 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PKNOX1P55347 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.54■■□□□ 1.04
PKNOX1P55347 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
PKNOX1P55347 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.54■■□□□ 1.04
PKNOX1P55347 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.54■■□□□ 1.04
PKNOX1P55347 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PKNOX1P55347 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PKNOX1P55347 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PKNOX1P55347 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
PKNOX1P55347 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.53■■□□□ 1.04
PKNOX1P55347 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PKNOX1P55347 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PKNOX1P55347 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.53■■□□□ 1.04
PKNOX1P55347 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
PKNOX1P55347 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.53■■□□□ 1.04
PKNOX1P55347 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
PKNOX1P55347 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
PKNOX1P55347 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.52■■□□□ 1.04
PKNOX1P55347 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
PKNOX1P55347 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.04
PKNOX1P55347 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.52■■□□□ 1.04
PKNOX1P55347 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
PKNOX1P55347 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.52■■□□□ 1.04
PKNOX1P55347 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PKNOX1P55347 AC092028.1-203ENST00000608262 953 ntBASIC21.52■■□□□ 1.04
PKNOX1P55347 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PKNOX1P55347 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
PKNOX1P55347 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.03
PKNOX1P55347 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
PKNOX1P55347 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PKNOX1P55347 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PKNOX1P55347 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PKNOX1P55347 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PKNOX1P55347 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PKNOX1P55347 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PKNOX1P55347 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PKNOX1P55347 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PKNOX1P55347 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.51■■□□□ 1.03
PKNOX1P55347 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.51■■□□□ 1.03
PKNOX1P55347 Z92544.1-202ENST00000571933 1220 ntBASIC21.51■■□□□ 1.03
PKNOX1P55347 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PKNOX1P55347 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms