Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDD3Q9Y3P4 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.41■□□□□ 0.7
RHBDD3Q9Y3P4 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDD3Q9Y3P4 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.41■□□□□ 0.7
RHBDD3Q9Y3P4 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDD3Q9Y3P4 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
RHBDD3Q9Y3P4 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
RHBDD3Q9Y3P4 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.41■□□□□ 0.7
RHBDD3Q9Y3P4 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDD3Q9Y3P4 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDD3Q9Y3P4 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDD3Q9Y3P4 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDD3Q9Y3P4 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC19.41■□□□□ 0.7
RHBDD3Q9Y3P4 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RHBDD3Q9Y3P4 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC19.4■□□□□ 0.7
RHBDD3Q9Y3P4 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.4■□□□□ 0.7
RHBDD3Q9Y3P4 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RHBDD3Q9Y3P4 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
RHBDD3Q9Y3P4 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RHBDD3Q9Y3P4 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RHBDD3Q9Y3P4 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC19.4■□□□□ 0.7
RHBDD3Q9Y3P4 KRT125P-201ENST00000546827 989 ntBASIC19.4■□□□□ 0.7
RHBDD3Q9Y3P4 Z92544.1-202ENST00000571933 1220 ntBASIC19.4■□□□□ 0.7
RHBDD3Q9Y3P4 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.4■□□□□ 0.7
RHBDD3Q9Y3P4 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RHBDD3Q9Y3P4 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
RHBDD3Q9Y3P4 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
RHBDD3Q9Y3P4 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
RHBDD3Q9Y3P4 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
RHBDD3Q9Y3P4 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
RHBDD3Q9Y3P4 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.39■□□□□ 0.69
RHBDD3Q9Y3P4 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RHBDD3Q9Y3P4 AC009299.2-201ENST00000482477 511 ntBASIC19.39■□□□□ 0.69
RHBDD3Q9Y3P4 AL451085.2-201ENST00000605085 799 ntBASIC19.39■□□□□ 0.69
RHBDD3Q9Y3P4 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC19.39■□□□□ 0.69
RHBDD3Q9Y3P4 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RHBDD3Q9Y3P4 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
RHBDD3Q9Y3P4 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RHBDD3Q9Y3P4 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
RHBDD3Q9Y3P4 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
RHBDD3Q9Y3P4 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RHBDD3Q9Y3P4 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
RHBDD3Q9Y3P4 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RHBDD3Q9Y3P4 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.38■□□□□ 0.69
RHBDD3Q9Y3P4 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RHBDD3Q9Y3P4 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
RHBDD3Q9Y3P4 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.38■□□□□ 0.69
RHBDD3Q9Y3P4 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RHBDD3Q9Y3P4 AC239859.2-201ENST00000444165 318 ntBASIC19.38■□□□□ 0.69
RHBDD3Q9Y3P4 AC092028.1-203ENST00000608262 953 ntBASIC19.38■□□□□ 0.69
RHBDD3Q9Y3P4 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
RHBDD3Q9Y3P4 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.38■□□□□ 0.69
RHBDD3Q9Y3P4 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
RHBDD3Q9Y3P4 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.37■□□□□ 0.69
RHBDD3Q9Y3P4 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RHBDD3Q9Y3P4 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
RHBDD3Q9Y3P4 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC19.37■□□□□ 0.69
RHBDD3Q9Y3P4 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
RHBDD3Q9Y3P4 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
RHBDD3Q9Y3P4 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RHBDD3Q9Y3P4 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
RHBDD3Q9Y3P4 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RHBDD3Q9Y3P4 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.37■□□□□ 0.69
RHBDD3Q9Y3P4 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC19.37■□□□□ 0.69
RHBDD3Q9Y3P4 MIR6722-201ENST00000617286 78 ntBASIC19.37■□□□□ 0.69
RHBDD3Q9Y3P4 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
RHBDD3Q9Y3P4 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RHBDD3Q9Y3P4 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.37■□□□□ 0.69
RHBDD3Q9Y3P4 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RHBDD3Q9Y3P4 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
RHBDD3Q9Y3P4 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC19.36■□□□□ 0.69
RHBDD3Q9Y3P4 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
RHBDD3Q9Y3P4 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
RHBDD3Q9Y3P4 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.36■□□□□ 0.69
RHBDD3Q9Y3P4 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RHBDD3Q9Y3P4 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.36■□□□□ 0.69
RHBDD3Q9Y3P4 MIR4787-201ENST00000607364 84 ntBASIC19.36■□□□□ 0.69
RHBDD3Q9Y3P4 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
RHBDD3Q9Y3P4 AC127496.7-201ENST00000625110 1798 ntBASIC19.36■□□□□ 0.69
RHBDD3Q9Y3P4 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
RHBDD3Q9Y3P4 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RHBDD3Q9Y3P4 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RHBDD3Q9Y3P4 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RHBDD3Q9Y3P4 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.36■□□□□ 0.69
RHBDD3Q9Y3P4 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.35■□□□□ 0.69
RHBDD3Q9Y3P4 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RHBDD3Q9Y3P4 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RHBDD3Q9Y3P4 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.35■□□□□ 0.69
RHBDD3Q9Y3P4 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RHBDD3Q9Y3P4 AC079630.1-202ENST00000618127 1840 ntBASIC19.35■□□□□ 0.69
RHBDD3Q9Y3P4 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RHBDD3Q9Y3P4 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RHBDD3Q9Y3P4 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.35■□□□□ 0.69
RHBDD3Q9Y3P4 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
RHBDD3Q9Y3P4 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
RHBDD3Q9Y3P4 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
RHBDD3Q9Y3P4 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC19.35■□□□□ 0.69
RHBDD3Q9Y3P4 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.35■□□□□ 0.69
RHBDD3Q9Y3P4 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RHBDD3Q9Y3P4 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms