Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 LINC01124-201ENST00000409786 2117 ntBASIC26.56■■□□□ 1.84
HLA-DOAP06340 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
HLA-DOAP06340 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
HLA-DOAP06340 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC26.56■■□□□ 1.84
HLA-DOAP06340 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC26.56■■□□□ 1.84
HLA-DOAP06340 AL499627.2-201ENST00000606283 725 ntBASIC26.56■■□□□ 1.84
HLA-DOAP06340 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
HLA-DOAP06340 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
HLA-DOAP06340 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
HLA-DOAP06340 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
HLA-DOAP06340 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
HLA-DOAP06340 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
HLA-DOAP06340 AC144652.1-201ENST00000609974 1624 ntBASIC26.55■■□□□ 1.84
HLA-DOAP06340 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
HLA-DOAP06340 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC26.55■■□□□ 1.84
HLA-DOAP06340 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC26.54■■□□□ 1.84
HLA-DOAP06340 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
HLA-DOAP06340 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
HLA-DOAP06340 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC26.54■■□□□ 1.84
HLA-DOAP06340 SHD-204ENST00000599689 1729 ntTSL 5 BASIC26.53■■□□□ 1.84
HLA-DOAP06340 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
HLA-DOAP06340 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
HLA-DOAP06340 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC26.53■■□□□ 1.84
HLA-DOAP06340 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC26.53■■□□□ 1.84
HLA-DOAP06340 MIR6821-201ENST00000617625 74 ntBASIC26.53■■□□□ 1.84
HLA-DOAP06340 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC26.53■■□□□ 1.84
HLA-DOAP06340 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
HLA-DOAP06340 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
HLA-DOAP06340 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC26.52■■□□□ 1.84
HLA-DOAP06340 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
HLA-DOAP06340 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC26.52■■□□□ 1.84
HLA-DOAP06340 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC26.52■■□□□ 1.84
HLA-DOAP06340 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC26.52■■□□□ 1.84
HLA-DOAP06340 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
HLA-DOAP06340 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC26.52■■□□□ 1.84
HLA-DOAP06340 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
HLA-DOAP06340 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC26.52■■□□□ 1.84
HLA-DOAP06340 LINC01529-204ENST00000636474 1715 ntBASIC26.52■■□□□ 1.84
HLA-DOAP06340 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC26.51■■□□□ 1.84
HLA-DOAP06340 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
HLA-DOAP06340 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
HLA-DOAP06340 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC26.51■■□□□ 1.83
HLA-DOAP06340 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
HLA-DOAP06340 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
HLA-DOAP06340 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC26.51■■□□□ 1.83
HLA-DOAP06340 AC097381.1-201ENST00000429019 1296 ntBASIC26.51■■□□□ 1.83
HLA-DOAP06340 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC26.51■■□□□ 1.83
HLA-DOAP06340 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC26.51■■□□□ 1.83
HLA-DOAP06340 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC26.51■■□□□ 1.83
HLA-DOAP06340 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
HLA-DOAP06340 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC26.5■■□□□ 1.83
HLA-DOAP06340 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC26.5■■□□□ 1.83
HLA-DOAP06340 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC26.5■■□□□ 1.83
HLA-DOAP06340 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
HLA-DOAP06340 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC26.5■■□□□ 1.83
HLA-DOAP06340 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
HLA-DOAP06340 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC26.5■■□□□ 1.83
HLA-DOAP06340 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC26.5■■□□□ 1.83
HLA-DOAP06340 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC26.5■■□□□ 1.83
HLA-DOAP06340 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
HLA-DOAP06340 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC26.5■■□□□ 1.83
HLA-DOAP06340 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
HLA-DOAP06340 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
HLA-DOAP06340 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
HLA-DOAP06340 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
HLA-DOAP06340 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
HLA-DOAP06340 TSPY26P-201ENST00000476365 1326 ntBASIC26.49■■□□□ 1.83
HLA-DOAP06340 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
HLA-DOAP06340 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
HLA-DOAP06340 AICDA-202ENST00000537228 667 ntTSL 5 BASIC26.49■■□□□ 1.83
HLA-DOAP06340 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC26.49■■□□□ 1.83
HLA-DOAP06340 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
HLA-DOAP06340 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC26.49■■□□□ 1.83
HLA-DOAP06340 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC26.49■■□□□ 1.83
HLA-DOAP06340 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC26.48■■□□□ 1.83
HLA-DOAP06340 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC26.48■■□□□ 1.83
HLA-DOAP06340 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
HLA-DOAP06340 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
HLA-DOAP06340 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
HLA-DOAP06340 JTB-203ENST00000368589 1216 ntTSL 2 BASIC26.48■■□□□ 1.83
HLA-DOAP06340 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
HLA-DOAP06340 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
HLA-DOAP06340 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
HLA-DOAP06340 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
HLA-DOAP06340 AL139125.2-201ENST00000623134 1869 ntBASIC26.48■■□□□ 1.83
HLA-DOAP06340 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
HLA-DOAP06340 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
HLA-DOAP06340 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
HLA-DOAP06340 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC26.47■■□□□ 1.83
HLA-DOAP06340 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
HLA-DOAP06340 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC26.47■■□□□ 1.83
HLA-DOAP06340 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC26.47■■□□□ 1.83
HLA-DOAP06340 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
HLA-DOAP06340 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC26.47■■□□□ 1.83
HLA-DOAP06340 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC26.47■■□□□ 1.83
HLA-DOAP06340 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
HLA-DOAP06340 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC26.47■■□□□ 1.83
HLA-DOAP06340 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
HLA-DOAP06340 OR2I1P-207ENST00000453522 948 ntBASIC26.46■■□□□ 1.83
HLA-DOAP06340 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC26.46■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms