Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PSMB4-206ENST00000495288 986 ntTSL 220.76■□□□□ 0.916e-18■□□□□ 8.1
YBX3P16989 PSMB4-207ENST00000495805 811 ntTSL 217.36■□□□□ 0.376e-18■□□□□ 8.1
YBX3P16989 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.661e-19■□□□□ 8.1
YBX3P16989 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC20.08■□□□□ 0.81e-19■□□□□ 8.1
YBX3P16989 CP-206ENST00000471356 671 ntTSL 26.55□□□□□ -1.363e-9■□□□□ 8.1
YBX3P16989 CP-214ENST00000497797 606 ntTSL 26.51□□□□□ -1.373e-9■□□□□ 8.1
YBX3P16989 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC28.45■■■□□ 2.148e-13■□□□□ 8.1
YBX3P16989 TARDBP-231ENST00000639599 1283 ntTSL 520.01■□□□□ 0.798e-13■□□□□ 8.1
YBX3P16989 TARDBP-221ENST00000619555 682 ntTSL 515.29■□□□□ 0.048e-13■□□□□ 8.1
YBX3P16989 TARDBP-202ENST00000315091 1835 ntTSL 5 BASIC14.22□□□□□ -0.138e-13■□□□□ 8.1
YBX3P16989 LINC01287-202ENST00000453187 430 ntTSL 314.09□□□□□ -0.158e-13■□□□□ 8.1
YBX3P16989 TARDBP-217ENST00000616545 920 ntTSL 5 BASIC14.04□□□□□ -0.168e-13■□□□□ 8.1
YBX3P16989 TARDBP-226ENST00000621790 1008 ntTSL 5 BASIC14.04□□□□□ -0.168e-13■□□□□ 8.1
YBX3P16989 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.188e-13■□□□□ 8.1
YBX3P16989 TARDBP-223ENST00000620632 706 ntTSL 313.86□□□□□ -0.198e-13■□□□□ 8.1
YBX3P16989 TARDBP-211ENST00000610369 563 ntTSL 512.97□□□□□ -0.338e-13■□□□□ 8.1
YBX3P16989 TARDBP-218ENST00000617172 980 ntTSL 512.97□□□□□ -0.338e-13■□□□□ 8.1
YBX3P16989 TARDBP-227ENST00000622057 706 ntTSL 512.8□□□□□ -0.368e-13■□□□□ 8.1
YBX3P16989 TARDBP-206ENST00000473869 1946 ntTSL 512.7□□□□□ -0.388e-13■□□□□ 8.1
YBX3P16989 TARDBP-222ENST00000620505 657 ntTSL 512.08□□□□□ -0.488e-13■□□□□ 8.1
YBX3P16989 TARDBP-230ENST00000639083 2269 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.498e-13■□□□□ 8.1
YBX3P16989 AL109811.4-201ENST00000614757 1793 ntTSL 5 BASIC11.18□□□□□ -0.628e-13■□□□□ 8.1
YBX3P16989 TARDBP-224ENST00000621573 992 ntTSL 310.19□□□□□ -0.788e-13■□□□□ 8.1
YBX3P16989 TARDBP-213ENST00000611963 739 ntTSL 510□□□□□ -0.818e-13■□□□□ 8.1
YBX3P16989 TARDBP-216ENST00000614494 515 ntTSL 59.82□□□□□ -0.848e-13■□□□□ 8.1
YBX3P16989 TARDBP-212ENST00000611008 929 ntTSL 58.32□□□□□ -1.088e-13■□□□□ 8.1
YBX3P16989 AL109811.4-203ENST00000612542 554 ntAPPRIS P1 TSL 55.94□□□□□ -1.468e-13■□□□□ 8.1
YBX3P16989 AL109811.4-202ENST00000611136 700 ntTSL 55.78□□□□□ -1.488e-13■□□□□ 8.1
YBX3P16989 TARDBP-208ENST00000477447 409 ntTSL 54.7□□□□□ -1.668e-13■□□□□ 8.1
YBX3P16989 WDR6-214ENST00000488572 610 ntTSL 427.99■■■□□ 2.071e-7■□□□□ 8.1
YBX3P16989 SUMF2-206ENST00000413952 881 ntTSL 327.63■■■□□ 2.011e-7■□□□□ 8.1
YBX3P16989 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.611e-7■□□□□ 8.1
YBX3P16989 SUMF2-214ENST00000452216 913 ntTSL 1 (best)24.8■■□□□ 1.561e-7■□□□□ 8.1
YBX3P16989 WDR6-206ENST00000438660 852 ntTSL 524.51■■□□□ 1.511e-7■□□□□ 8.1
YBX3P16989 IDH1-202ENST00000415282 942 ntTSL 223.84■■□□□ 1.411e-7■□□□□ 8.1
YBX3P16989 WDR6-212ENST00000472878 556 ntTSL 522.36■■□□□ 1.171e-7■□□□□ 8.1
YBX3P16989 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.971e-7■□□□□ 8.1
YBX3P16989 WDR6-216ENST00000489684 1155 ntTSL 221.01■□□□□ 0.951e-7■□□□□ 8.1
YBX3P16989 SUMF2-213ENST00000451338 912 ntAPPRIS ALT2 TSL 320.81■□□□□ 0.921e-7■□□□□ 8.1
YBX3P16989 WDR6-209ENST00000461687 555 ntTSL 420.73■□□□□ 0.911e-7■□□□□ 8.1
YBX3P16989 SUMF2-219ENST00000531229 737 ntTSL 218.91■□□□□ 0.621e-7■□□□□ 8.1
YBX3P16989 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC18.78■□□□□ 0.61e-7■□□□□ 8.1
YBX3P16989 SUMF2-212ENST00000447501 1249 ntTSL 218.67■□□□□ 0.581e-7■□□□□ 8.1
YBX3P16989 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC18.35■□□□□ 0.531e-7■□□□□ 8.1
YBX3P16989 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.2■□□□□ 0.341e-7■□□□□ 8.1
YBX3P16989 OAZ2-208ENST00000560781 540 ntTSL 416.62■□□□□ 0.251e-7■□□□□ 8.1
YBX3P16989 DGUOK-206ENST00000489796 692 ntTSL 314.92□□□□□ -0.021e-7■□□□□ 8.1
YBX3P16989 WDR6-201ENST00000395474 4401 ntTSL 1 (best) BASIC14.15□□□□□ -0.141e-7■□□□□ 8.1
YBX3P16989 WDR6-221ENST00000610967 4259 ntTSL 1 (best) BASIC13.39□□□□□ -0.271e-7■□□□□ 8.1
YBX3P16989 WDR6-207ENST00000448293 3377 ntTSL 2 BASIC13.17□□□□□ -0.31e-7■□□□□ 8.1
YBX3P16989 SUMF2-215ENST00000461912 529 ntTSL 413.11□□□□□ -0.311e-7■□□□□ 8.1
YBX3P16989 WDR6-211ENST00000471162 3565 ntTSL 1 (best)12.47□□□□□ -0.411e-7■□□□□ 8.1
YBX3P16989 ARG2-203ENST00000557120 836 ntTSL 212.2□□□□□ -0.461e-7■□□□□ 8.1
YBX3P16989 WDR6-204ENST00000420783 3656 ntTSL 1 (best)12.06□□□□□ -0.481e-7■□□□□ 8.1
YBX3P16989 OAZ2-209ENST00000560837 707 ntTSL 211.95□□□□□ -0.51e-7■□□□□ 8.1
YBX3P16989 WDR6-208ENST00000452875 3916 ntTSL 1 (best)11.61□□□□□ -0.551e-7■□□□□ 8.1
YBX3P16989 WDR6-220ENST00000608424 4070 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.621e-7■□□□□ 8.1
YBX3P16989 ARG2-202ENST00000556491 457 ntTSL 58.19□□□□□ -1.11e-7■□□□□ 8.1
YBX3P16989 OAZ2-204ENST00000559665 541 ntTSL 48.13□□□□□ -1.111e-7■□□□□ 8.1
YBX3P16989 OAZ2-206ENST00000559912 576 ntTSL 58.13□□□□□ -1.111e-7■□□□□ 8.1
YBX3P16989 UBA6-206ENST00000514261 623 ntTSL 56.56□□□□□ -1.361e-7■□□□□ 8.1
YBX3P16989 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.731e-7■□□□□ 8.1
YBX3P16989 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC28.51■■■□□ 2.151e-7■□□□□ 8.1
YBX3P16989 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC27.65■■■□□ 2.021e-7■□□□□ 8.1
YBX3P16989 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC27.13■■□□□ 1.931e-7■□□□□ 8.1
YBX3P16989 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC27■■□□□ 1.911e-7■□□□□ 8.1
YBX3P16989 AKAP8L-216ENST00000599488 514 ntTSL 425.01■■□□□ 1.591e-7■□□□□ 8.1
YBX3P16989 AKAP8L-215ENST00000599137 608 ntTSL 424.87■■□□□ 1.571e-7■□□□□ 8.1
YBX3P16989 AKAP8L-203ENST00000594594 2251 ntTSL 523.01■■□□□ 1.271e-7■□□□□ 8.1
YBX3P16989 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC22.82■■□□□ 1.241e-7■□□□□ 8.1
YBX3P16989 AKAP8L-204ENST00000594893 1453 ntTSL 222.24■■□□□ 1.151e-7■□□□□ 8.1
YBX3P16989 AKAP8L-207ENST00000595136 531 ntTSL 421.73■■□□□ 1.071e-7■□□□□ 8.1
YBX3P16989 AKAP8L-220ENST00000609519 2113 ntTSL 221.47■■□□□ 1.031e-7■□□□□ 8.1
YBX3P16989 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.971e-7■□□□□ 8.1
YBX3P16989 AKT2-211ENST00000427375 554 ntTSL 419.3■□□□□ 0.681e-7■□□□□ 8.1
YBX3P16989 AKAP8L-219ENST00000601147 583 ntTSL 219.25■□□□□ 0.671e-7■□□□□ 8.1
YBX3P16989 AKAP8L-211ENST00000596213 929 ntTSL 318.94■□□□□ 0.621e-7■□□□□ 8.1
YBX3P16989 AKAP8L-205ENST00000595067 548 ntTSL 418.41■□□□□ 0.541e-7■□□□□ 8.1
YBX3P16989 AKAP8L-202ENST00000593845 2749 ntTSL 218.35■□□□□ 0.531e-7■□□□□ 8.1
YBX3P16989 AKAP8L-218ENST00000600247 583 ntTSL 417.44■□□□□ 0.381e-7■□□□□ 8.1
YBX3P16989 AKAP8L-213ENST00000597994 470 ntTSL 415.02■□□□□ -01e-7■□□□□ 8.1
YBX3P16989 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC14.3□□□□□ -0.121e-7■□□□□ 8.1
YBX3P16989 GCN1-202ENST00000547263 366 ntTSL 314.2□□□□□ -0.141e-7■□□□□ 8.1
YBX3P16989 XBP1-206ENST00000484256 2173 ntTSL 214.06□□□□□ -0.161e-7■□□□□ 8.1
YBX3P16989 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC13.92□□□□□ -0.181e-7■□□□□ 8.1
YBX3P16989 ABCA11P-203ENST00000507854 1503 ntTSL 1 (best)11.84□□□□□ -0.511e-7■□□□□ 8.1
YBX3P16989 UBE2E1-206ENST00000467766 585 ntTSL 2 BASIC11.49□□□□□ -0.571e-7■□□□□ 8.1
YBX3P16989 AKAP8L-210ENST00000596195 553 ntTSL 411.18□□□□□ -0.621e-7■□□□□ 8.1
YBX3P16989 PRIM1-203ENST00000548173 590 ntTSL 410.44□□□□□ -0.741e-7■□□□□ 8.1
YBX3P16989 ZNF721-206ENST00000515578 1679 ntTSL 1 (best)9.67□□□□□ -0.861e-7■□□□□ 8.1
YBX3P16989 ABCA11P-201ENST00000451020 1815 ntTSL 2 BASIC9.66□□□□□ -0.861e-7■□□□□ 8.1
YBX3P16989 ZNF721-202ENST00000505900 664 ntTSL 1 (best)9.37□□□□□ -0.911e-7■□□□□ 8.1
YBX3P16989 UAP1-207ENST00000486089 1147 ntTSL 29.03□□□□□ -0.961e-7■□□□□ 8.1
YBX3P16989 ZNF721-203ENST00000506646 935 ntTSL 2 BASIC8.64□□□□□ -1.031e-7■□□□□ 8.1
YBX3P16989 ABCA11P-204ENST00000514396 1423 ntTSL 1 (best)8.58□□□□□ -1.041e-7■□□□□ 8.1
YBX3P16989 UBE2E1-210ENST00000493707 857 ntTSL 38□□□□□ -1.131e-7■□□□□ 8.1
YBX3P16989 PRIM1-205ENST00000550224 1206 ntTSL 57.79□□□□□ -1.161e-7■□□□□ 8.1
YBX3P16989 TMEM209-205ENST00000471985 571 ntTSL 47.76□□□□□ -1.171e-7■□□□□ 8.1
YBX3P16989 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC6.65□□□□□ -1.351e-7■□□□□ 8.1
YBX3P16989 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC6.41□□□□□ -1.381e-7■□□□□ 8.1
Retrieved 100 of 29,075 protein–RNA pairs in 445.5 ms