RNA–Protein interactions for RNA: ENST00000547263.1

GCN1-202, Transcript of GCN1, eIF2 alpha kinase activator homolog, humanhuman

TSL 3

Gene GCN1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCN1-202ENST00000547263 NISCHQ9Y2I1 1504 aa26.95■■□□□ 1.91
GCN1-202ENST00000547263 CCDC180Q9P1Z9 1646 aa24.04■■□□□ 1.44
GCN1-202ENST00000547263 ABCC9O60706 1549 aa23.33■■□□□ 1.32
GCN1-202ENST00000547263 NACADO15069 1562 aa22.55■■□□□ 1.2
GCN1-202ENST00000547263 RB1CC1Q8TDY2 1594 aa22.54■■□□□ 1.2
GCN1-202ENST00000547263 MYO15BQ96JP2 1530 aa22.52■■□□□ 1.2
GCN1-202ENST00000547263 ZCCHC6Q5VYS8 1495 aaKnown RBP22.48■■□□□ 1.19
GCN1-202ENST00000547263 DCAF1Q9Y4B6 1507 aa22.41■■□□□ 1.18
GCN1-202ENST00000547263 DCAF8L2P0C7V8 631 aa22.18■■□□□ 1.14
GCN1-202ENST00000547263 UNC13AQ9UPW8 1703 aa22.1■■□□□ 1.13
GCN1-202ENST00000547263 BICRAQ9NZM4 1560 aa21.94■■□□□ 1.1
GCN1-202ENST00000547263 SCRIBQ14160 1630 aa21.77■■□□□ 1.08
GCN1-202ENST00000547263 SHROOM4Q9ULL8 1493 aa21.75■■□□□ 1.07
GCN1-202ENST00000547263 PABPN1Q86U42 306 aaKnown RBP eCLIP21.72■■□□□ 1.076e-9■□□□□ 9.8
GCN1-202ENST00000547263 DNAJC5BQ9UF47 199 aa21.46■■□□□ 1.03
GCN1-202ENST00000547263 EIF4G1Q04637 1599 aaKnown RBP21.3■■□□□ 1
GCN1-202ENST00000547263 CC2D2AQ9P2K1 1620 aa21.18■□□□□ 0.98
GCN1-202ENST00000547263 CECR2Q9BXF3 1484 aa21■□□□□ 0.95
GCN1-202ENST00000547263 SMARCA4P51532 1647 aa20.92■□□□□ 0.94
GCN1-202ENST00000547263 BAZ1AQ9NRL2 1556 aaPredicted RBP20.88■□□□□ 0.93
GCN1-202ENST00000547263 NCAPD3P42695 1498 aa20.82■□□□□ 0.92
GCN1-202ENST00000547263 PEG3Q9GZU2 1588 aa20.81■□□□□ 0.92
GCN1-202ENST00000547263 ATAD2BQ9ULI0 1458 aa20.79■□□□□ 0.92
GCN1-202ENST00000547263 SMARCA2P51531 1590 aa20.76■□□□□ 0.91
GCN1-202ENST00000547263 MROH2BQ7Z745 1585 aa20.75■□□□□ 0.91
GCN1-202ENST00000547263 HMGXB3Q12766 1538 aa20.73■□□□□ 0.91
GCN1-202ENST00000547263 BAZ1BQ9UIG0 1483 aaKnown RBP20.56■□□□□ 0.88
GCN1-202ENST00000547263 WIZO95785 1651 aa20.51■□□□□ 0.87
GCN1-202ENST00000547263 RSF1Q96T23 1441 aaPredicted RBP20.51■□□□□ 0.87
GCN1-202ENST00000547263 TOP2AP11388 1531 aaKnown RBP20.32■□□□□ 0.84
GCN1-202ENST00000547263 LAMC3Q9Y6N6 1575 aa20.25■□□□□ 0.83
GCN1-202ENST00000547263 NESP48681 1621 aa20.23■□□□□ 0.83
GCN1-202ENST00000547263 CADPSQ9ULU8 1353 aa20.15■□□□□ 0.82
GCN1-202ENST00000547263 CFTRP13569 1480 aa20.08■□□□□ 0.81
GCN1-202ENST00000547263 ERCC6Q03468 1493 aa20.06■□□□□ 0.8
GCN1-202ENST00000547263 CCDC88BA6NC98 1476 aa20.05■□□□□ 0.8
GCN1-202ENST00000547263 PDS5BQ9NTI5 1447 aa20.04■□□□□ 0.8
GCN1-202ENST00000547263 KIF21AQ7Z4S6 1674 aa20.03■□□□□ 0.8
GCN1-202ENST00000547263 THOC2Q8NI27 1593 aaKnown RBP20.02■□□□□ 0.8
GCN1-202ENST00000547263 CUX2O14529 1486 aa20■□□□□ 0.79
GCN1-202ENST00000547263 PRDM2Q13029 1718 aa19.97■□□□□ 0.79
GCN1-202ENST00000547263 FANCD2Q9BXW9 1451 aa19.89■□□□□ 0.77
GCN1-202ENST00000547263 CEP164Q9UPV0 1460 aa19.87■□□□□ 0.77
GCN1-202ENST00000547263 WDR62O43379 1518 aa19.86■□□□□ 0.77
GCN1-202ENST00000547263 MRC2Q9UBG0 1479 aa19.86■□□□□ 0.77
GCN1-202ENST00000547263 URB2Q14146 1524 aaKnown RBP19.73■□□□□ 0.75
GCN1-202ENST00000547263 SUPT5HO00267 1087 aaKnown RBP19.73■□□□□ 0.75
GCN1-202ENST00000547263 ABCC8Q09428 1581 aa19.61■□□□□ 0.73
GCN1-202ENST00000547263 TOPBP1Q92547 1522 aa19.61■□□□□ 0.73
GCN1-202ENST00000547263 DNMBPQ6XZF7 1577 aa19.6■□□□□ 0.73
GCN1-202ENST00000547263 IFT140Q96RY7 1462 aa19.48■□□□□ 0.71
GCN1-202ENST00000547263 CUX1P39880 1505 aa19.46■□□□□ 0.71
GCN1-202ENST00000547263 TARBP1Q13395 1621 aaKnown RBP19.45■□□□□ 0.7
GCN1-202ENST00000547263 POLA1P09884 1462 aaPredicted RBP19.44■□□□□ 0.7
GCN1-202ENST00000547263 ZNF608Q9ULD9 1512 aaPredicted RBP19.37■□□□□ 0.69
GCN1-202ENST00000547263 FGD5Q6ZNL6 1462 aa19.37■□□□□ 0.69
GCN1-202ENST00000547263 BIVM-ERCC5R4GMW8 1640 aa19.35■□□□□ 0.69
GCN1-202ENST00000547263 WDR97A6NE52 1622 aa19.34■□□□□ 0.69
GCN1-202ENST00000547263 DNAJC5Q9H3Z4 198 aa19.34■□□□□ 0.69
GCN1-202ENST00000547263 EIF4G3O43432 1585 aaKnown RBP19.33■□□□□ 0.69
GCN1-202ENST00000547263 TOP2BQ02880 1626 aa19.33■□□□□ 0.68
GCN1-202ENST00000547263 RAD54L2Q9Y4B4 1467 aa19.3■□□□□ 0.68
GCN1-202ENST00000547263 SOGA1O94964 1423 aa19.3■□□□□ 0.68
GCN1-202ENST00000547263 SYNJ1O43426 1573 aa19.29■□□□□ 0.68
GCN1-202ENST00000547263 WRNQ14191 1432 aaPredicted RBP eCLIP19.29■□□□□ 0.68
GCN1-202ENST00000547263 ABCA10Q8WWZ4 1543 aa19.24■□□□□ 0.67
GCN1-202ENST00000547263 AQRO60306 1485 aaKnown RBP eCLIP19.22■□□□□ 0.671e-6■■■■■ 33.8
GCN1-202ENST00000547263 ABCA5Q8WWZ7 1642 aa19.19■□□□□ 0.66
GCN1-202ENST00000547263 TDRD9Q8NDG6 1382 aaKnown RBP19.16■□□□□ 0.66
GCN1-202ENST00000547263 PBRM1Q86U86 1689 aa19.11■□□□□ 0.65
GCN1-202ENST00000547263 GRIN2BQ13224 1484 aa19.11■□□□□ 0.65
GCN1-202ENST00000547263 GAPVD1Q14C86 1478 aa19.1■□□□□ 0.65
GCN1-202ENST00000547263 MAGI1Q96QZ7 1491 aaPredicted RBP19.09■□□□□ 0.65
GCN1-202ENST00000547263 CHD1O14646 1710 aa19.08■□□□□ 0.65
GCN1-202ENST00000547263 SNAPC4Q5SXM2 1469 aa19.07■□□□□ 0.64
GCN1-202ENST00000547263 OSCARQ8IYS5 282 aa19.05■□□□□ 0.64
GCN1-202ENST00000547263 SYNJ2O15056 1496 aa19.01■□□□□ 0.63
GCN1-202ENST00000547263 ERICH3Q5RHP9 1530 aa19■□□□□ 0.63
GCN1-202ENST00000547263 ADAMTS12P58397 1594 aa18.98■□□□□ 0.63
GCN1-202ENST00000547263 CLASP1Q7Z460 1538 aa18.94■□□□□ 0.62
GCN1-202ENST00000547263 FHAD1B1AJZ9 1412 aa18.9■□□□□ 0.62
GCN1-202ENST00000547263 KIF27Q86VH2 1401 aa18.88■□□□□ 0.61
GCN1-202ENST00000547263 GRIN2AQ12879 1464 aa18.88■□□□□ 0.61
GCN1-202ENST00000547263 CHMP7Q8WUX9 453 aaPredicted RBP18.86■□□□□ 0.61
GCN1-202ENST00000547263 NUP160Q12769 1436 aa18.85■□□□□ 0.61
GCN1-202ENST00000547263 RIMBP3CA6NJZ7 1639 aa18.84■□□□□ 0.61
GCN1-202ENST00000547263 RIMBP3BA6NNM3 1639 aa18.84■□□□□ 0.61
GCN1-202ENST00000547263 RIMBP3Q9UFD9 1639 aa18.84■□□□□ 0.61
GCN1-202ENST00000547263 IGF1RP08069 1367 aa18.83■□□□□ 0.61
GCN1-202ENST00000547263 ARHGEF11O15085 1522 aa18.83■□□□□ 0.6
GCN1-202ENST00000547263 CUL7Q14999 1698 aa18.82■□□□□ 0.6
GCN1-202ENST00000547263 FBLN2P98095 1184 aa18.82■□□□□ 0.6
GCN1-202ENST00000547263 CEP170Q5SW79 1584 aa18.81■□□□□ 0.6
GCN1-202ENST00000547263 SHROOM2Q13796 1616 aa18.75■□□□□ 0.59
GCN1-202ENST00000547263 RUSC2Q8N2Y8 1516 aa18.72■□□□□ 0.59
GCN1-202ENST00000547263 TRIM41Q8WV44 630 aa18.69■□□□□ 0.58
GCN1-202ENST00000547263 ARAP1Q96P48 1450 aa18.69■□□□□ 0.58
GCN1-202ENST00000547263 CARMIL1Q5VZK9 1371 aa18.68■□□□□ 0.58
GCN1-202ENST00000547263 KIAA0586Q9BVV6 1533 aa18.63■□□□□ 0.57
GCN1-202ENST00000547263 ERCC6L2Q5T890 1561 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms