Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CDT1Q9H211 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC24.49■■□□□ 1.51
CDT1Q9H211 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CDT1Q9H211 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CDT1Q9H211 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CDT1Q9H211 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CDT1Q9H211 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC24.48■■□□□ 1.51
CDT1Q9H211 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
CDT1Q9H211 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC24.48■■□□□ 1.51
CDT1Q9H211 AC133561.4-201ENST00000566112 224 ntBASIC24.48■■□□□ 1.51
CDT1Q9H211 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC24.48■■□□□ 1.51
CDT1Q9H211 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC24.47■■□□□ 1.51
CDT1Q9H211 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CDT1Q9H211 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CDT1Q9H211 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
CDT1Q9H211 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CDT1Q9H211 AC019069.1-201ENST00000610008 1333 ntBASIC24.47■■□□□ 1.51
CDT1Q9H211 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC24.47■■□□□ 1.51
CDT1Q9H211 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
CDT1Q9H211 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
CDT1Q9H211 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CDT1Q9H211 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
CDT1Q9H211 GTSE1-AS1-202ENST00000623117 1518 ntBASIC24.46■■□□□ 1.51
CDT1Q9H211 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CDT1Q9H211 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CDT1Q9H211 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC24.46■■□□□ 1.51
CDT1Q9H211 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC24.46■■□□□ 1.51
CDT1Q9H211 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC24.46■■□□□ 1.51
CDT1Q9H211 AC005837.3-201ENST00000612163 286 ntBASIC24.46■■□□□ 1.51
CDT1Q9H211 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC24.46■■□□□ 1.51
CDT1Q9H211 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CDT1Q9H211 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CDT1Q9H211 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC24.46■■□□□ 1.51
CDT1Q9H211 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
CDT1Q9H211 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.51
CDT1Q9H211 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
CDT1Q9H211 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC24.45■■□□□ 1.51
CDT1Q9H211 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
CDT1Q9H211 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC24.45■■□□□ 1.5
CDT1Q9H211 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CDT1Q9H211 MIR3181-201ENST00000578512 73 ntBASIC24.45■■□□□ 1.5
CDT1Q9H211 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC24.45■■□□□ 1.5
CDT1Q9H211 AL031432.3-201ENST00000607698 485 ntBASIC24.45■■□□□ 1.5
CDT1Q9H211 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CDT1Q9H211 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC24.44■■□□□ 1.5
CDT1Q9H211 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CDT1Q9H211 AC144652.1-201ENST00000609974 1624 ntBASIC24.44■■□□□ 1.5
CDT1Q9H211 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CDT1Q9H211 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CDT1Q9H211 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC24.44■■□□□ 1.5
CDT1Q9H211 AL138724.1-201ENST00000606771 1088 ntBASIC24.44■■□□□ 1.5
CDT1Q9H211 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC24.44■■□□□ 1.5
CDT1Q9H211 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CDT1Q9H211 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC24.44■■□□□ 1.5
CDT1Q9H211 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDT1Q9H211 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDT1Q9H211 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
CDT1Q9H211 PTMA-205ENST00000410064 814 ntTSL 2 BASIC24.43■■□□□ 1.5
CDT1Q9H211 MIR4767-201ENST00000582827 78 ntBASIC24.43■■□□□ 1.5
CDT1Q9H211 AC011298.3-201ENST00000615796 283 ntBASIC24.43■■□□□ 1.5
CDT1Q9H211 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC24.43■■□□□ 1.5
CDT1Q9H211 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDT1Q9H211 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
CDT1Q9H211 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDT1Q9H211 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CDT1Q9H211 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDT1Q9H211 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
CDT1Q9H211 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDT1Q9H211 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDT1Q9H211 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC24.42■■□□□ 1.5
CDT1Q9H211 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC24.42■■□□□ 1.5
CDT1Q9H211 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC24.42■■□□□ 1.5
CDT1Q9H211 pRNA.6-201ENST00000610482 90 ntBASIC24.42■■□□□ 1.5
CDT1Q9H211 pRNA.5-201ENST00000612139 90 ntBASIC24.42■■□□□ 1.5
CDT1Q9H211 pRNA.11-201ENST00000618423 90 ntBASIC24.42■■□□□ 1.5
CDT1Q9H211 pRNA.13-201ENST00000619112 90 ntBASIC24.42■■□□□ 1.5
CDT1Q9H211 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC24.42■■□□□ 1.5
CDT1Q9H211 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC24.42■■□□□ 1.5
CDT1Q9H211 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDT1Q9H211 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDT1Q9H211 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CDT1Q9H211 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CDT1Q9H211 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
CDT1Q9H211 H19-210ENST00000439725 1929 ntTSL 2 BASIC24.41■■□□□ 1.5
CDT1Q9H211 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC24.41■■□□□ 1.5
CDT1Q9H211 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC24.41■■□□□ 1.5
CDT1Q9H211 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CDT1Q9H211 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
CDT1Q9H211 AC079630.1-202ENST00000618127 1840 ntBASIC24.41■■□□□ 1.5
CDT1Q9H211 HES6-206ENST00000409574 738 ntTSL 2 BASIC24.41■■□□□ 1.5
CDT1Q9H211 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC24.41■■□□□ 1.5
CDT1Q9H211 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CDT1Q9H211 FP325331.1-202ENST00000623531 1380 ntBASIC24.41■■□□□ 1.5
CDT1Q9H211 AC093323.1-202ENST00000635031 2045 ntBASIC24.4■■□□□ 1.5
CDT1Q9H211 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CDT1Q9H211 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CDT1Q9H211 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CDT1Q9H211 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC24.4■■□□□ 1.5
CDT1Q9H211 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC24.4■■□□□ 1.5
CDT1Q9H211 DUX4L4-201ENST00000566884 1269 ntBASIC24.4■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms