Protein–RNA interactions for Protein: Q6ZW05

PTCHD4, Patched domain-containing protein 4, humanhuman

Predictions only

Length 846 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4Q6ZW05 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD4Q6ZW05 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD4Q6ZW05 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTCHD4Q6ZW05 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTCHD4Q6ZW05 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTCHD4Q6ZW05 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTCHD4Q6ZW05 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
PTCHD4Q6ZW05 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTCHD4Q6ZW05 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTCHD4Q6ZW05 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.61■□□□□ 0.89
PTCHD4Q6ZW05 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTCHD4Q6ZW05 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
PTCHD4Q6ZW05 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.61■□□□□ 0.89
PTCHD4Q6ZW05 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTCHD4Q6ZW05 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD4Q6ZW05 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD4Q6ZW05 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD4Q6ZW05 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD4Q6ZW05 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
PTCHD4Q6ZW05 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD4Q6ZW05 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD4Q6ZW05 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD4Q6ZW05 ABHD17AP5-201ENST00000580133 923 ntBASIC20.6■□□□□ 0.89
PTCHD4Q6ZW05 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD4Q6ZW05 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
PTCHD4Q6ZW05 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
PTCHD4Q6ZW05 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD4Q6ZW05 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD4Q6ZW05 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD4Q6ZW05 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTCHD4Q6ZW05 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
PTCHD4Q6ZW05 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
PTCHD4Q6ZW05 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.59■□□□□ 0.89
PTCHD4Q6ZW05 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
PTCHD4Q6ZW05 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTCHD4Q6ZW05 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTCHD4Q6ZW05 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTCHD4Q6ZW05 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTCHD4Q6ZW05 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTCHD4Q6ZW05 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTCHD4Q6ZW05 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PTCHD4Q6ZW05 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PTCHD4Q6ZW05 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.58■□□□□ 0.89
PTCHD4Q6ZW05 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
PTCHD4Q6ZW05 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC20.58■□□□□ 0.89
PTCHD4Q6ZW05 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
PTCHD4Q6ZW05 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PTCHD4Q6ZW05 AC137767.1-201ENST00000602918 1920 ntBASIC20.58■□□□□ 0.88
PTCHD4Q6ZW05 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PTCHD4Q6ZW05 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
PTCHD4Q6ZW05 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD4Q6ZW05 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD4Q6ZW05 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.57■□□□□ 0.88
PTCHD4Q6ZW05 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.57■□□□□ 0.88
PTCHD4Q6ZW05 DUX4L18-201ENST00000553347 1267 ntBASIC20.57■□□□□ 0.88
PTCHD4Q6ZW05 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD4Q6ZW05 NTF6A-201ENST00000591175 560 ntBASIC20.57■□□□□ 0.88
PTCHD4Q6ZW05 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD4Q6ZW05 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD4Q6ZW05 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.57■□□□□ 0.88
PTCHD4Q6ZW05 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.57■□□□□ 0.88
PTCHD4Q6ZW05 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD4Q6ZW05 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD4Q6ZW05 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD4Q6ZW05 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
PTCHD4Q6ZW05 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD4Q6ZW05 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD4Q6ZW05 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD4Q6ZW05 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD4Q6ZW05 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC20.56■□□□□ 0.88
PTCHD4Q6ZW05 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD4Q6ZW05 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD4Q6ZW05 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.56■□□□□ 0.88
PTCHD4Q6ZW05 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD4Q6ZW05 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD4Q6ZW05 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD4Q6ZW05 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD4Q6ZW05 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD4Q6ZW05 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD4Q6ZW05 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.55■□□□□ 0.88
PTCHD4Q6ZW05 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD4Q6ZW05 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD4Q6ZW05 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.55■□□□□ 0.88
PTCHD4Q6ZW05 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD4Q6ZW05 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
PTCHD4Q6ZW05 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD4Q6ZW05 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD4Q6ZW05 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.55■□□□□ 0.88
PTCHD4Q6ZW05 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD4Q6ZW05 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC20.55■□□□□ 0.88
PTCHD4Q6ZW05 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
PTCHD4Q6ZW05 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD4Q6ZW05 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD4Q6ZW05 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.54■□□□□ 0.88
PTCHD4Q6ZW05 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD4Q6ZW05 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.54■□□□□ 0.88
PTCHD4Q6ZW05 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD4Q6ZW05 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD4Q6ZW05 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD4Q6ZW05 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms