Protein–RNA interactions for Protein: P06753

TPM3, Tropomyosin alpha-3 chain, humanhuman

Predictions only

Length 285 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3P06753 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
TPM3P06753 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
TPM3P06753 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
TPM3P06753 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC25.16■■□□□ 1.62
TPM3P06753 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC25.16■■□□□ 1.62
TPM3P06753 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
TPM3P06753 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
TPM3P06753 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
TPM3P06753 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC25.16■■□□□ 1.62
TPM3P06753 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
TPM3P06753 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
TPM3P06753 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
TPM3P06753 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC25.15■■□□□ 1.62
TPM3P06753 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
TPM3P06753 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC25.15■■□□□ 1.62
TPM3P06753 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
TPM3P06753 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC25.15■■□□□ 1.62
TPM3P06753 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC25.15■■□□□ 1.62
TPM3P06753 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC25.15■■□□□ 1.62
TPM3P06753 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC25.15■■□□□ 1.62
TPM3P06753 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC25.15■■□□□ 1.62
TPM3P06753 EI24-213ENST00000618552 1747 ntTSL 5 BASIC25.15■■□□□ 1.62
TPM3P06753 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
TPM3P06753 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
TPM3P06753 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
TPM3P06753 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
TPM3P06753 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
TPM3P06753 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
TPM3P06753 SSSCA1-AS1-201ENST00000567594 614 ntBASIC25.14■■□□□ 1.62
TPM3P06753 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC25.14■■□□□ 1.61
TPM3P06753 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
TPM3P06753 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
TPM3P06753 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
TPM3P06753 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
TPM3P06753 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC25.13■■□□□ 1.61
TPM3P06753 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
TPM3P06753 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
TPM3P06753 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
TPM3P06753 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
TPM3P06753 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC25.12■■□□□ 1.61
TPM3P06753 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC25.12■■□□□ 1.61
TPM3P06753 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC25.12■■□□□ 1.61
TPM3P06753 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
TPM3P06753 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
TPM3P06753 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
TPM3P06753 GCA-201ENST00000233612 1694 ntTSL 2 BASIC25.12■■□□□ 1.61
TPM3P06753 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC25.12■■□□□ 1.61
TPM3P06753 MED17-221ENST00000639724 2317 ntTSL 5 BASIC25.12■■□□□ 1.61
TPM3P06753 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC25.12■■□□□ 1.61
TPM3P06753 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC25.11■■□□□ 1.61
TPM3P06753 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC25.11■■□□□ 1.61
TPM3P06753 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC25.11■■□□□ 1.61
TPM3P06753 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
TPM3P06753 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC25.11■■□□□ 1.61
TPM3P06753 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC25.11■■□□□ 1.61
TPM3P06753 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC25.11■■□□□ 1.61
TPM3P06753 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
TPM3P06753 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC25.1■■□□□ 1.61
TPM3P06753 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
TPM3P06753 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC25.1■■□□□ 1.61
TPM3P06753 RPS2P7-201ENST00000447334 885 ntBASIC25.1■■□□□ 1.61
TPM3P06753 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC25.1■■□□□ 1.61
TPM3P06753 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC25.1■■□□□ 1.61
TPM3P06753 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
TPM3P06753 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
TPM3P06753 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC25.09■■□□□ 1.61
TPM3P06753 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC25.09■■□□□ 1.61
TPM3P06753 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
TPM3P06753 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC25.09■■□□□ 1.61
TPM3P06753 AL592295.1-201ENST00000400984 884 ntBASIC25.09■■□□□ 1.61
TPM3P06753 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
TPM3P06753 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
TPM3P06753 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
TPM3P06753 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
TPM3P06753 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
TPM3P06753 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC25.09■■□□□ 1.61
TPM3P06753 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC25.09■■□□□ 1.61
TPM3P06753 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
TPM3P06753 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
TPM3P06753 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
TPM3P06753 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC25.08■■□□□ 1.61
TPM3P06753 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
TPM3P06753 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC25.08■■□□□ 1.61
TPM3P06753 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
TPM3P06753 RPS2-202ENST00000526522 924 ntTSL 2 BASIC25.08■■□□□ 1.61
TPM3P06753 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC25.08■■□□□ 1.61
TPM3P06753 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
TPM3P06753 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.6
TPM3P06753 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
TPM3P06753 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
TPM3P06753 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
TPM3P06753 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
TPM3P06753 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
TPM3P06753 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
TPM3P06753 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC25.07■■□□□ 1.6
TPM3P06753 AC133552.2-201ENST00000619106 1032 ntBASIC25.07■■□□□ 1.6
TPM3P06753 AL022069.1-201ENST00000568025 1636 ntBASIC25.07■■□□□ 1.6
TPM3P06753 AL137060.1-201ENST00000618151 2648 ntBASIC25.07■■□□□ 1.6
TPM3P06753 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.6
TPM3P06753 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 130.7 ms