Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC10.23□□□□□ -0.77
USH2AO75445 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC10.23□□□□□ -0.77
USH2AO75445 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC10.23□□□□□ -0.77
USH2AO75445 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
USH2AO75445 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
USH2AO75445 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC10.22□□□□□ -0.77
USH2AO75445 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC10.22□□□□□ -0.77
USH2AO75445 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
USH2AO75445 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
USH2AO75445 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC10.22□□□□□ -0.77
USH2AO75445 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
USH2AO75445 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
USH2AO75445 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
USH2AO75445 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC10.22□□□□□ -0.77
USH2AO75445 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
USH2AO75445 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
USH2AO75445 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC10.22□□□□□ -0.77
USH2AO75445 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
USH2AO75445 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
USH2AO75445 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
USH2AO75445 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
USH2AO75445 LINC01003-201ENST00000564834 1764 ntBASIC10.22□□□□□ -0.77
USH2AO75445 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
USH2AO75445 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC10.21□□□□□ -0.77
USH2AO75445 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC10.21□□□□□ -0.77
USH2AO75445 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
USH2AO75445 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC10.21□□□□□ -0.77
USH2AO75445 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC10.21□□□□□ -0.78
USH2AO75445 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
USH2AO75445 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC10.21□□□□□ -0.78
USH2AO75445 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
USH2AO75445 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC10.21□□□□□ -0.78
USH2AO75445 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
USH2AO75445 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC10.21□□□□□ -0.78
USH2AO75445 METTL26-203ENST00000397664 604 ntTSL 2 BASIC10.21□□□□□ -0.78
USH2AO75445 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC10.21□□□□□ -0.78
USH2AO75445 POU5F1P3-201ENST00000428824 1078 ntBASIC10.21□□□□□ -0.78
USH2AO75445 AICDA-202ENST00000537228 667 ntTSL 5 BASIC10.21□□□□□ -0.78
USH2AO75445 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
USH2AO75445 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC10.21□□□□□ -0.78
USH2AO75445 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
USH2AO75445 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC10.21□□□□□ -0.78
USH2AO75445 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC10.21□□□□□ -0.78
USH2AO75445 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
USH2AO75445 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
USH2AO75445 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
USH2AO75445 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
USH2AO75445 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
USH2AO75445 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC10.2□□□□□ -0.78
USH2AO75445 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
USH2AO75445 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
USH2AO75445 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
USH2AO75445 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
USH2AO75445 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC10.2□□□□□ -0.78
USH2AO75445 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC10.2□□□□□ -0.78
USH2AO75445 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
USH2AO75445 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
USH2AO75445 MPST-204ENST00000404393 1329 ntTSL 5 BASIC10.2□□□□□ -0.78
USH2AO75445 ECEL1P3-201ENST00000427961 737 ntBASIC10.2□□□□□ -0.78
USH2AO75445 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC10.2□□□□□ -0.78
USH2AO75445 MMAB-206ENST00000540016 945 ntTSL 3 BASIC10.2□□□□□ -0.78
USH2AO75445 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC10.2□□□□□ -0.78
USH2AO75445 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC10.2□□□□□ -0.78
USH2AO75445 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC10.2□□□□□ -0.78
USH2AO75445 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC10.2□□□□□ -0.78
USH2AO75445 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
USH2AO75445 FAM210CP-201ENST00000445714 574 ntBASIC10.2□□□□□ -0.78
USH2AO75445 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC10.2□□□□□ -0.78
USH2AO75445 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
USH2AO75445 AC009086.3-201ENST00000623486 1008 ntBASIC10.2□□□□□ -0.78
USH2AO75445 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
USH2AO75445 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
USH2AO75445 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC10.2□□□□□ -0.78
USH2AO75445 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC10.2□□□□□ -0.78
USH2AO75445 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.78
USH2AO75445 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
USH2AO75445 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC10.19□□□□□ -0.78
USH2AO75445 AC142472.1-201ENST00000612013 1741 ntBASIC10.19□□□□□ -0.78
USH2AO75445 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC10.19□□□□□ -0.78
USH2AO75445 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
USH2AO75445 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC10.19□□□□□ -0.78
USH2AO75445 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
USH2AO75445 DUSP5P2-201ENST00000426873 1033 ntBASIC10.19□□□□□ -0.78
USH2AO75445 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.78
USH2AO75445 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC10.19□□□□□ -0.78
USH2AO75445 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC10.19□□□□□ -0.78
USH2AO75445 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC10.19□□□□□ -0.78
USH2AO75445 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC10.19□□□□□ -0.78
USH2AO75445 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC10.19□□□□□ -0.78
USH2AO75445 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
USH2AO75445 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
USH2AO75445 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.78
USH2AO75445 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
USH2AO75445 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC10.18□□□□□ -0.78
USH2AO75445 SHD-204ENST00000599689 1729 ntTSL 5 BASIC10.18□□□□□ -0.78
USH2AO75445 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC10.18□□□□□ -0.78
USH2AO75445 AC073210.2-201ENST00000430369 194 ntBASIC10.18□□□□□ -0.78
USH2AO75445 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC10.18□□□□□ -0.78
USH2AO75445 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
USH2AO75445 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms