Protein–RNA interactions for Protein: Q6ZW05

PTCHD4, Patched domain-containing protein 4, humanhuman

Predictions only

Length 846 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4Q6ZW05 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PTCHD4Q6ZW05 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
PTCHD4Q6ZW05 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTCHD4Q6ZW05 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
PTCHD4Q6ZW05 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD4Q6ZW05 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD4Q6ZW05 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD4Q6ZW05 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD4Q6ZW05 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
PTCHD4Q6ZW05 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD4Q6ZW05 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.69■□□□□ 0.9
PTCHD4Q6ZW05 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD4Q6ZW05 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD4Q6ZW05 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD4Q6ZW05 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
PTCHD4Q6ZW05 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD4Q6ZW05 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTCHD4Q6ZW05 AL592295.1-201ENST00000400984 884 ntBASIC20.68■□□□□ 0.9
PTCHD4Q6ZW05 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PTCHD4Q6ZW05 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.68■□□□□ 0.9
PTCHD4Q6ZW05 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTCHD4Q6ZW05 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.68■□□□□ 0.9
PTCHD4Q6ZW05 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.68■□□□□ 0.9
PTCHD4Q6ZW05 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.67■□□□□ 0.9
PTCHD4Q6ZW05 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD4Q6ZW05 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD4Q6ZW05 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD4Q6ZW05 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD4Q6ZW05 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD4Q6ZW05 AL161729.1-201ENST00000604104 1402 ntBASIC20.67■□□□□ 0.9
PTCHD4Q6ZW05 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD4Q6ZW05 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD4Q6ZW05 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.66■□□□□ 0.9
PTCHD4Q6ZW05 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTCHD4Q6ZW05 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTCHD4Q6ZW05 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC20.66■□□□□ 0.9
PTCHD4Q6ZW05 LONRF2P2-201ENST00000439212 571 ntBASIC20.66■□□□□ 0.9
PTCHD4Q6ZW05 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PTCHD4Q6ZW05 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.66■□□□□ 0.9
PTCHD4Q6ZW05 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.66■□□□□ 0.9
PTCHD4Q6ZW05 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.66■□□□□ 0.9
PTCHD4Q6ZW05 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.66■□□□□ 0.9
PTCHD4Q6ZW05 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PTCHD4Q6ZW05 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTCHD4Q6ZW05 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTCHD4Q6ZW05 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.66■□□□□ 0.9
PTCHD4Q6ZW05 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTCHD4Q6ZW05 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTCHD4Q6ZW05 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
PTCHD4Q6ZW05 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTCHD4Q6ZW05 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.65■□□□□ 0.9
PTCHD4Q6ZW05 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.65■□□□□ 0.9
PTCHD4Q6ZW05 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.65■□□□□ 0.9
PTCHD4Q6ZW05 AC127496.7-201ENST00000625110 1798 ntBASIC20.65■□□□□ 0.9
PTCHD4Q6ZW05 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTCHD4Q6ZW05 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTCHD4Q6ZW05 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.65■□□□□ 0.9
PTCHD4Q6ZW05 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTCHD4Q6ZW05 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTCHD4Q6ZW05 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
PTCHD4Q6ZW05 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.65■□□□□ 0.9
PTCHD4Q6ZW05 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTCHD4Q6ZW05 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.64■□□□□ 0.9
PTCHD4Q6ZW05 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.64■□□□□ 0.89
PTCHD4Q6ZW05 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PTCHD4Q6ZW05 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PTCHD4Q6ZW05 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PTCHD4Q6ZW05 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTCHD4Q6ZW05 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PTCHD4Q6ZW05 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
PTCHD4Q6ZW05 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD4Q6ZW05 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD4Q6ZW05 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD4Q6ZW05 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD4Q6ZW05 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD4Q6ZW05 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.63■□□□□ 0.89
PTCHD4Q6ZW05 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD4Q6ZW05 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD4Q6ZW05 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
PTCHD4Q6ZW05 ECEL1P1-201ENST00000373592 1742 ntBASIC20.63■□□□□ 0.89
PTCHD4Q6ZW05 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD4Q6ZW05 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
PTCHD4Q6ZW05 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD4Q6ZW05 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD4Q6ZW05 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD4Q6ZW05 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD4Q6ZW05 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD4Q6ZW05 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD4Q6ZW05 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD4Q6ZW05 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD4Q6ZW05 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD4Q6ZW05 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD4Q6ZW05 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.62■□□□□ 0.89
PTCHD4Q6ZW05 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
PTCHD4Q6ZW05 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
PTCHD4Q6ZW05 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.62■□□□□ 0.89
PTCHD4Q6ZW05 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD4Q6ZW05 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.62■□□□□ 0.89
PTCHD4Q6ZW05 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD4Q6ZW05 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms