Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDH1Q08174 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
PCDH1Q08174 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.79■■□□□ 1.08
PCDH1Q08174 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PCDH1Q08174 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
PCDH1Q08174 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.79■■□□□ 1.08
PCDH1Q08174 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDH1Q08174 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.79■■□□□ 1.08
PCDH1Q08174 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDH1Q08174 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.79■■□□□ 1.08
PCDH1Q08174 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.79■■□□□ 1.08
PCDH1Q08174 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDH1Q08174 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PCDH1Q08174 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDH1Q08174 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDH1Q08174 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.78■■□□□ 1.08
PCDH1Q08174 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.78■■□□□ 1.08
PCDH1Q08174 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDH1Q08174 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDH1Q08174 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.78■■□□□ 1.08
PCDH1Q08174 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDH1Q08174 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDH1Q08174 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.78■■□□□ 1.08
PCDH1Q08174 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDH1Q08174 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
PCDH1Q08174 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.77■■□□□ 1.08
PCDH1Q08174 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.77■■□□□ 1.08
PCDH1Q08174 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.77■■□□□ 1.08
PCDH1Q08174 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDH1Q08174 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDH1Q08174 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
PCDH1Q08174 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PCDH1Q08174 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.77■■□□□ 1.08
PCDH1Q08174 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.77■■□□□ 1.08
PCDH1Q08174 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
PCDH1Q08174 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDH1Q08174 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
PCDH1Q08174 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.76■■□□□ 1.07
PCDH1Q08174 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PCDH1Q08174 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.76■■□□□ 1.07
PCDH1Q08174 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.76■■□□□ 1.07
PCDH1Q08174 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.76■■□□□ 1.07
PCDH1Q08174 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.76■■□□□ 1.07
PCDH1Q08174 AC009299.2-201ENST00000482477 511 ntBASIC21.76■■□□□ 1.07
PCDH1Q08174 KRT125P-201ENST00000546827 989 ntBASIC21.76■■□□□ 1.07
PCDH1Q08174 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDH1Q08174 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.76■■□□□ 1.07
PCDH1Q08174 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
PCDH1Q08174 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PCDH1Q08174 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDH1Q08174 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDH1Q08174 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDH1Q08174 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDH1Q08174 AC012676.1-201ENST00000574705 1949 ntBASIC21.75■■□□□ 1.07
PCDH1Q08174 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.75■■□□□ 1.07
PCDH1Q08174 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
PCDH1Q08174 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
PCDH1Q08174 AL451085.2-201ENST00000605085 799 ntBASIC21.75■■□□□ 1.07
PCDH1Q08174 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDH1Q08174 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
PCDH1Q08174 AC005703.6-201ENST00000623265 1329 ntBASIC21.75■■□□□ 1.07
PCDH1Q08174 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.75■■□□□ 1.07
PCDH1Q08174 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDH1Q08174 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDH1Q08174 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PCDH1Q08174 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.74■■□□□ 1.07
PCDH1Q08174 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
PCDH1Q08174 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDH1Q08174 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDH1Q08174 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.74■■□□□ 1.07
PCDH1Q08174 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDH1Q08174 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PCDH1Q08174 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.74■■□□□ 1.07
PCDH1Q08174 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDH1Q08174 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
PCDH1Q08174 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDH1Q08174 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDH1Q08174 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
PCDH1Q08174 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDH1Q08174 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PCDH1Q08174 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDH1Q08174 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
PCDH1Q08174 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDH1Q08174 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDH1Q08174 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDH1Q08174 MIR4787-201ENST00000607364 84 ntBASIC21.73■■□□□ 1.07
PCDH1Q08174 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
PCDH1Q08174 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PCDH1Q08174 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDH1Q08174 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDH1Q08174 AC068473.5-201ENST00000616428 2072 ntBASIC21.72■■□□□ 1.07
PCDH1Q08174 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDH1Q08174 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
PCDH1Q08174 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PCDH1Q08174 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.72■■□□□ 1.07
PCDH1Q08174 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PCDH1Q08174 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDH1Q08174 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
PCDH1Q08174 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PCDH1Q08174 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 133.8 ms