Protein–RNA interactions for Protein: Q9NX63

CHCHD3, MICOS complex subunit MIC19, humanhuman

Known RBP Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3Q9NX63 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CHCHD3Q9NX63 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CHCHD3Q9NX63 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHCHD3Q9NX63 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.92■□□□□ 0.94
CHCHD3Q9NX63 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHCHD3Q9NX63 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
CHCHD3Q9NX63 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CHCHD3Q9NX63 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.92■□□□□ 0.94
CHCHD3Q9NX63 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHCHD3Q9NX63 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CHCHD3Q9NX63 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
CHCHD3Q9NX63 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHCHD3Q9NX63 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CHCHD3Q9NX63 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CHCHD3Q9NX63 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.91■□□□□ 0.94
CHCHD3Q9NX63 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.91■□□□□ 0.94
CHCHD3Q9NX63 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.91■□□□□ 0.94
CHCHD3Q9NX63 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.91■□□□□ 0.94
CHCHD3Q9NX63 AL137060.1-201ENST00000618151 2648 ntBASIC20.91■□□□□ 0.94
CHCHD3Q9NX63 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CHCHD3Q9NX63 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHCHD3Q9NX63 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
CHCHD3Q9NX63 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.9■□□□□ 0.94
CHCHD3Q9NX63 DUX4L11-201ENST00000611504 1267 ntBASIC20.9■□□□□ 0.94
CHCHD3Q9NX63 DUX4L12-201ENST00000614593 1267 ntBASIC20.9■□□□□ 0.94
CHCHD3Q9NX63 DUX4L14-201ENST00000621227 1267 ntBASIC20.9■□□□□ 0.94
CHCHD3Q9NX63 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHCHD3Q9NX63 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHCHD3Q9NX63 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
CHCHD3Q9NX63 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.89■□□□□ 0.94
CHCHD3Q9NX63 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.89■□□□□ 0.94
CHCHD3Q9NX63 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CHCHD3Q9NX63 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.89■□□□□ 0.94
CHCHD3Q9NX63 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.89■□□□□ 0.93
CHCHD3Q9NX63 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.89■□□□□ 0.93
CHCHD3Q9NX63 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.89■□□□□ 0.93
CHCHD3Q9NX63 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHCHD3Q9NX63 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.89■□□□□ 0.93
CHCHD3Q9NX63 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHCHD3Q9NX63 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CHCHD3Q9NX63 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHCHD3Q9NX63 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.88■□□□□ 0.93
CHCHD3Q9NX63 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.88■□□□□ 0.93
CHCHD3Q9NX63 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHCHD3Q9NX63 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHCHD3Q9NX63 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHCHD3Q9NX63 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.88■□□□□ 0.93
CHCHD3Q9NX63 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHCHD3Q9NX63 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHCHD3Q9NX63 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHCHD3Q9NX63 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.88■□□□□ 0.93
CHCHD3Q9NX63 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.88■□□□□ 0.93
CHCHD3Q9NX63 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CHCHD3Q9NX63 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHCHD3Q9NX63 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CHCHD3Q9NX63 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHCHD3Q9NX63 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHCHD3Q9NX63 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHCHD3Q9NX63 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
CHCHD3Q9NX63 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHCHD3Q9NX63 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHCHD3Q9NX63 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CHCHD3Q9NX63 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHCHD3Q9NX63 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
CHCHD3Q9NX63 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHCHD3Q9NX63 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CHCHD3Q9NX63 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHCHD3Q9NX63 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHCHD3Q9NX63 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CHCHD3Q9NX63 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.86■□□□□ 0.93
CHCHD3Q9NX63 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.86■□□□□ 0.93
CHCHD3Q9NX63 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CHCHD3Q9NX63 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CHCHD3Q9NX63 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CHCHD3Q9NX63 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.85■□□□□ 0.93
CHCHD3Q9NX63 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CHCHD3Q9NX63 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHCHD3Q9NX63 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHCHD3Q9NX63 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.85■□□□□ 0.93
CHCHD3Q9NX63 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHCHD3Q9NX63 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHCHD3Q9NX63 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CHCHD3Q9NX63 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
CHCHD3Q9NX63 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHCHD3Q9NX63 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CHCHD3Q9NX63 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHCHD3Q9NX63 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CHCHD3Q9NX63 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CHCHD3Q9NX63 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.84■□□□□ 0.93
CHCHD3Q9NX63 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.84■□□□□ 0.93
CHCHD3Q9NX63 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CHCHD3Q9NX63 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.84■□□□□ 0.93
CHCHD3Q9NX63 HLA-L-211ENST00000482052 1765 ntBASIC20.84■□□□□ 0.93
CHCHD3Q9NX63 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.84■□□□□ 0.93
CHCHD3Q9NX63 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHCHD3Q9NX63 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.84■□□□□ 0.93
CHCHD3Q9NX63 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CHCHD3Q9NX63 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CHCHD3Q9NX63 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.83■□□□□ 0.93
CHCHD3Q9NX63 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms