Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.92
DDX4Q9NQI0 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
DDX4Q9NQI0 EI24-204ENST00000527235 1625 ntTSL 5 BASIC27.07■■□□□ 1.92
DDX4Q9NQI0 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
DDX4Q9NQI0 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC27.06■■□□□ 1.92
DDX4Q9NQI0 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC27.06■■□□□ 1.92
DDX4Q9NQI0 CA15P2-201ENST00000611168 834 ntBASIC27.06■■□□□ 1.92
DDX4Q9NQI0 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC27.06■■□□□ 1.92
DDX4Q9NQI0 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
DDX4Q9NQI0 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
DDX4Q9NQI0 VGF-203ENST00000611537 1622 ntTSL 5 BASIC27.05■■□□□ 1.92
DDX4Q9NQI0 HES6-206ENST00000409574 738 ntTSL 2 BASIC27.05■■□□□ 1.92
DDX4Q9NQI0 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC27.05■■□□□ 1.92
DDX4Q9NQI0 AC241377.3-202ENST00000626088 1088 ntBASIC27.05■■□□□ 1.92
DDX4Q9NQI0 AC241585.3-202ENST00000628937 1088 ntBASIC27.05■■□□□ 1.92
DDX4Q9NQI0 AC245100.8-202ENST00000629247 1058 ntBASIC27.05■■□□□ 1.92
DDX4Q9NQI0 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC27.05■■□□□ 1.92
DDX4Q9NQI0 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC27.05■■□□□ 1.92
DDX4Q9NQI0 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
DDX4Q9NQI0 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
DDX4Q9NQI0 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC27.04■■□□□ 1.92
DDX4Q9NQI0 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
DDX4Q9NQI0 MIR3181-201ENST00000578512 73 ntBASIC27.04■■□□□ 1.92
DDX4Q9NQI0 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC27.04■■□□□ 1.92
DDX4Q9NQI0 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
DDX4Q9NQI0 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC27.04■■□□□ 1.92
DDX4Q9NQI0 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
DDX4Q9NQI0 RASA4CP-201ENST00000424092 1398 ntBASIC27.03■■□□□ 1.92
DDX4Q9NQI0 RBM38-205ENST00000440234 686 ntTSL 2 BASIC27.03■■□□□ 1.92
DDX4Q9NQI0 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC27.03■■□□□ 1.92
DDX4Q9NQI0 AC008764.7-201ENST00000593779 1081 ntBASIC27.03■■□□□ 1.92
DDX4Q9NQI0 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC27.03■■□□□ 1.92
DDX4Q9NQI0 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC27.03■■□□□ 1.92
DDX4Q9NQI0 AC009086.3-201ENST00000623486 1008 ntBASIC27.03■■□□□ 1.92
DDX4Q9NQI0 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
DDX4Q9NQI0 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC27.02■■□□□ 1.92
DDX4Q9NQI0 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
DDX4Q9NQI0 AC138932.3-201ENST00000567634 1902 ntBASIC27.02■■□□□ 1.92
DDX4Q9NQI0 AP003733.4-201ENST00000623785 1697 ntBASIC27.02■■□□□ 1.92
DDX4Q9NQI0 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC27.02■■□□□ 1.92
DDX4Q9NQI0 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC27.02■■□□□ 1.92
DDX4Q9NQI0 AC136469.2-201ENST00000623944 1028 ntBASIC27.02■■□□□ 1.92
DDX4Q9NQI0 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC27.02■■□□□ 1.92
DDX4Q9NQI0 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC27.02■■□□□ 1.92
DDX4Q9NQI0 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
DDX4Q9NQI0 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
DDX4Q9NQI0 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
DDX4Q9NQI0 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC27.01■■□□□ 1.92
DDX4Q9NQI0 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
DDX4Q9NQI0 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
DDX4Q9NQI0 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
DDX4Q9NQI0 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
DDX4Q9NQI0 AC027682.1-201ENST00000562846 899 ntBASIC27.01■■□□□ 1.91
DDX4Q9NQI0 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
DDX4Q9NQI0 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
DDX4Q9NQI0 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC27.01■■□□□ 1.91
DDX4Q9NQI0 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
DDX4Q9NQI0 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC27.01■■□□□ 1.91
DDX4Q9NQI0 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
DDX4Q9NQI0 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC27■■□□□ 1.91
DDX4Q9NQI0 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC27■■□□□ 1.91
DDX4Q9NQI0 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC27■■□□□ 1.91
DDX4Q9NQI0 MED17-227ENST00000640521 2047 ntTSL 5 BASIC27■■□□□ 1.91
DDX4Q9NQI0 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC27■■□□□ 1.91
DDX4Q9NQI0 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC26.99■■□□□ 1.91
DDX4Q9NQI0 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC26.99■■□□□ 1.91
DDX4Q9NQI0 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
DDX4Q9NQI0 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC26.99■■□□□ 1.91
DDX4Q9NQI0 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
DDX4Q9NQI0 AC099791.1-201ENST00000416440 715 ntBASIC26.99■■□□□ 1.91
DDX4Q9NQI0 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC26.99■■□□□ 1.91
DDX4Q9NQI0 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC26.99■■□□□ 1.91
DDX4Q9NQI0 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC26.99■■□□□ 1.91
DDX4Q9NQI0 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
DDX4Q9NQI0 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.99■■□□□ 1.91
DDX4Q9NQI0 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC26.98■■□□□ 1.91
DDX4Q9NQI0 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC26.98■■□□□ 1.91
DDX4Q9NQI0 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
DDX4Q9NQI0 GTSE1-AS1-202ENST00000623117 1518 ntBASIC26.98■■□□□ 1.91
DDX4Q9NQI0 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
DDX4Q9NQI0 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC26.97■■□□□ 1.91
DDX4Q9NQI0 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
DDX4Q9NQI0 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
DDX4Q9NQI0 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
DDX4Q9NQI0 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC26.97■■□□□ 1.91
DDX4Q9NQI0 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
DDX4Q9NQI0 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC26.97■■□□□ 1.91
DDX4Q9NQI0 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC26.97■■□□□ 1.91
DDX4Q9NQI0 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC26.97■■□□□ 1.91
DDX4Q9NQI0 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
DDX4Q9NQI0 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC26.96■■□□□ 1.91
DDX4Q9NQI0 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
DDX4Q9NQI0 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC26.96■■□□□ 1.91
DDX4Q9NQI0 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
DDX4Q9NQI0 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
DDX4Q9NQI0 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
DDX4Q9NQI0 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC26.95■■□□□ 1.91
DDX4Q9NQI0 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC26.95■■□□□ 1.91
DDX4Q9NQI0 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.95■■□□□ 1.9
DDX4Q9NQI0 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC26.95■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms