Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 DUSP8P3-201ENST00000399571 1760 ntBASIC20.87■□□□□ 0.93
ZNF540Q8NDQ6 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
ZNF540Q8NDQ6 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF540Q8NDQ6 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
ZNF540Q8NDQ6 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF540Q8NDQ6 AC137767.1-201ENST00000602918 1920 ntBASIC20.87■□□□□ 0.93
ZNF540Q8NDQ6 HES4-204ENST00000484667 667 ntTSL 3 BASIC20.87■□□□□ 0.93
ZNF540Q8NDQ6 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.87■□□□□ 0.93
ZNF540Q8NDQ6 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF540Q8NDQ6 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF540Q8NDQ6 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF540Q8NDQ6 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
ZNF540Q8NDQ6 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
ZNF540Q8NDQ6 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
ZNF540Q8NDQ6 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF540Q8NDQ6 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF540Q8NDQ6 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF540Q8NDQ6 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF540Q8NDQ6 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
ZNF540Q8NDQ6 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF540Q8NDQ6 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.86■□□□□ 0.93
ZNF540Q8NDQ6 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF540Q8NDQ6 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.86■□□□□ 0.93
ZNF540Q8NDQ6 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.86■□□□□ 0.93
ZNF540Q8NDQ6 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF540Q8NDQ6 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF540Q8NDQ6 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.86■□□□□ 0.93
ZNF540Q8NDQ6 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF540Q8NDQ6 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF540Q8NDQ6 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF540Q8NDQ6 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF540Q8NDQ6 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF540Q8NDQ6 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF540Q8NDQ6 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF540Q8NDQ6 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF540Q8NDQ6 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF540Q8NDQ6 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
ZNF540Q8NDQ6 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF540Q8NDQ6 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF540Q8NDQ6 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.85■□□□□ 0.93
ZNF540Q8NDQ6 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF540Q8NDQ6 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
ZNF540Q8NDQ6 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF540Q8NDQ6 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF540Q8NDQ6 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.84■□□□□ 0.93
ZNF540Q8NDQ6 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF540Q8NDQ6 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF540Q8NDQ6 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF540Q8NDQ6 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC20.84■□□□□ 0.93
ZNF540Q8NDQ6 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF540Q8NDQ6 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.84■□□□□ 0.93
ZNF540Q8NDQ6 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF540Q8NDQ6 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
ZNF540Q8NDQ6 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.84■□□□□ 0.93
ZNF540Q8NDQ6 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF540Q8NDQ6 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.84■□□□□ 0.93
ZNF540Q8NDQ6 AC092068.2-201ENST00000590491 1708 ntBASIC20.84■□□□□ 0.93
ZNF540Q8NDQ6 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
ZNF540Q8NDQ6 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF540Q8NDQ6 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF540Q8NDQ6 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF540Q8NDQ6 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.83■□□□□ 0.93
ZNF540Q8NDQ6 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
ZNF540Q8NDQ6 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF540Q8NDQ6 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF540Q8NDQ6 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF540Q8NDQ6 RP9P-202ENST00000450133 1212 ntBASIC20.83■□□□□ 0.93
ZNF540Q8NDQ6 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.83■□□□□ 0.93
ZNF540Q8NDQ6 AC025884.2-201ENST00000553429 711 ntBASIC20.83■□□□□ 0.93
ZNF540Q8NDQ6 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF540Q8NDQ6 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
ZNF540Q8NDQ6 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
ZNF540Q8NDQ6 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
ZNF540Q8NDQ6 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.83■□□□□ 0.92
ZNF540Q8NDQ6 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
ZNF540Q8NDQ6 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.83■□□□□ 0.92
ZNF540Q8NDQ6 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.82■□□□□ 0.92
ZNF540Q8NDQ6 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF540Q8NDQ6 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF540Q8NDQ6 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.82■□□□□ 0.92
ZNF540Q8NDQ6 ECEL1P1-201ENST00000373592 1742 ntBASIC20.82■□□□□ 0.92
ZNF540Q8NDQ6 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF540Q8NDQ6 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.82■□□□□ 0.92
ZNF540Q8NDQ6 MIR3960-201ENST00000583311 91 ntBASIC20.82■□□□□ 0.92
ZNF540Q8NDQ6 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF540Q8NDQ6 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.82■□□□□ 0.92
ZNF540Q8NDQ6 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF540Q8NDQ6 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF540Q8NDQ6 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
ZNF540Q8NDQ6 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF540Q8NDQ6 AC009831.1-201ENST00000580420 1582 ntBASIC20.81■□□□□ 0.92
ZNF540Q8NDQ6 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ZNF540Q8NDQ6 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ZNF540Q8NDQ6 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.81■□□□□ 0.92
ZNF540Q8NDQ6 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ZNF540Q8NDQ6 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
ZNF540Q8NDQ6 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC20.81■□□□□ 0.92
ZNF540Q8NDQ6 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.81■□□□□ 0.92
ZNF540Q8NDQ6 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.81■□□□□ 0.92
ZNF540Q8NDQ6 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 123.2 ms