Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
CDH6P55285 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.36
CDH6P55285 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CDH6P55285 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC23.57■■□□□ 1.36
CDH6P55285 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
CDH6P55285 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CDH6P55285 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC23.57■■□□□ 1.36
CDH6P55285 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC23.57■■□□□ 1.36
CDH6P55285 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
CDH6P55285 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
CDH6P55285 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC23.57■■□□□ 1.36
CDH6P55285 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
CDH6P55285 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CDH6P55285 AC021242.3-201ENST00000607598 1377 ntBASIC23.56■■□□□ 1.36
CDH6P55285 RNF146-205ENST00000477776 762 ntTSL 3 BASIC23.56■■□□□ 1.36
CDH6P55285 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC23.56■■□□□ 1.36
CDH6P55285 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
CDH6P55285 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CDH6P55285 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
CDH6P55285 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC23.56■■□□□ 1.36
CDH6P55285 LTK-203ENST00000453182 2412 ntTSL 2 BASIC23.56■■□□□ 1.36
CDH6P55285 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CDH6P55285 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
CDH6P55285 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
CDH6P55285 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CDH6P55285 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CDH6P55285 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CDH6P55285 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC23.55■■□□□ 1.36
CDH6P55285 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
CDH6P55285 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC23.54■■□□□ 1.36
CDH6P55285 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC23.54■■□□□ 1.36
CDH6P55285 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC23.54■■□□□ 1.36
CDH6P55285 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.54■■□□□ 1.36
CDH6P55285 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CDH6P55285 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CDH6P55285 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CDH6P55285 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
CDH6P55285 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.54■■□□□ 1.36
CDH6P55285 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CDH6P55285 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC23.54■■□□□ 1.36
CDH6P55285 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
CDH6P55285 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CDH6P55285 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CDH6P55285 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CDH6P55285 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
CDH6P55285 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC23.54■■□□□ 1.36
CDH6P55285 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CDH6P55285 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CDH6P55285 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CDH6P55285 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CDH6P55285 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CDH6P55285 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CDH6P55285 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC23.53■■□□□ 1.36
CDH6P55285 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC23.53■■□□□ 1.36
CDH6P55285 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CDH6P55285 AL451085.2-201ENST00000605085 799 ntBASIC23.53■■□□□ 1.36
CDH6P55285 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CDH6P55285 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
CDH6P55285 H19-210ENST00000439725 1929 ntTSL 2 BASIC23.53■■□□□ 1.36
CDH6P55285 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC23.53■■□□□ 1.36
CDH6P55285 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
CDH6P55285 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CDH6P55285 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CDH6P55285 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CDH6P55285 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
CDH6P55285 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC23.52■■□□□ 1.36
CDH6P55285 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC23.52■■□□□ 1.36
CDH6P55285 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CDH6P55285 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC23.52■■□□□ 1.36
CDH6P55285 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.52■■□□□ 1.36
CDH6P55285 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
CDH6P55285 AC092068.2-201ENST00000590491 1708 ntBASIC23.51■■□□□ 1.35
CDH6P55285 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
CDH6P55285 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC23.51■■□□□ 1.35
CDH6P55285 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CDH6P55285 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC23.51■■□□□ 1.35
CDH6P55285 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CDH6P55285 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
CDH6P55285 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.51■■□□□ 1.35
CDH6P55285 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.51■■□□□ 1.35
CDH6P55285 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC23.51■■□□□ 1.35
CDH6P55285 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CDH6P55285 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC23.51■■□□□ 1.35
CDH6P55285 REST-206ENST00000612429 1376 ntTSL 5 BASIC23.51■■□□□ 1.35
CDH6P55285 REST-207ENST00000616975 1370 ntTSL 5 BASIC23.51■■□□□ 1.35
CDH6P55285 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CDH6P55285 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.5■■□□□ 1.35
CDH6P55285 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CDH6P55285 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
CDH6P55285 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC23.5■■□□□ 1.35
CDH6P55285 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC23.5■■□□□ 1.35
CDH6P55285 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.5■■□□□ 1.35
CDH6P55285 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC23.5■■□□□ 1.35
CDH6P55285 AC009299.2-201ENST00000482477 511 ntBASIC23.5■■□□□ 1.35
CDH6P55285 Z92544.1-202ENST00000571933 1220 ntBASIC23.5■■□□□ 1.35
CDH6P55285 USF2-207ENST00000595068 1612 ntTSL 5 BASIC23.5■■□□□ 1.35
CDH6P55285 ME2-208ENST00000638937 2471 ntTSL 5 BASIC23.5■■□□□ 1.35
CDH6P55285 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC23.5■■□□□ 1.35
CDH6P55285 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC23.5■■□□□ 1.35
CDH6P55285 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms