Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC26.24■■□□□ 1.79
PCDHA1Q9Y5I3 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PCDHA1Q9Y5I3 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PCDHA1Q9Y5I3 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PCDHA1Q9Y5I3 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PCDHA1Q9Y5I3 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC26.23■■□□□ 1.79
PCDHA1Q9Y5I3 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
PCDHA1Q9Y5I3 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC26.23■■□□□ 1.79
PCDHA1Q9Y5I3 EI24-204ENST00000527235 1625 ntTSL 5 BASIC26.23■■□□□ 1.79
PCDHA1Q9Y5I3 LINC01124-201ENST00000409786 2117 ntBASIC26.23■■□□□ 1.79
PCDHA1Q9Y5I3 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
PCDHA1Q9Y5I3 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC26.22■■□□□ 1.79
PCDHA1Q9Y5I3 AL139125.2-201ENST00000623134 1869 ntBASIC26.22■■□□□ 1.79
PCDHA1Q9Y5I3 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
PCDHA1Q9Y5I3 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
PCDHA1Q9Y5I3 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
PCDHA1Q9Y5I3 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC26.21■■□□□ 1.79
PCDHA1Q9Y5I3 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
PCDHA1Q9Y5I3 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC26.21■■□□□ 1.79
PCDHA1Q9Y5I3 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PCDHA1Q9Y5I3 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PCDHA1Q9Y5I3 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
PCDHA1Q9Y5I3 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
PCDHA1Q9Y5I3 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PCDHA1Q9Y5I3 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
PCDHA1Q9Y5I3 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
PCDHA1Q9Y5I3 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
PCDHA1Q9Y5I3 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC26.2■■□□□ 1.78
PCDHA1Q9Y5I3 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC26.2■■□□□ 1.78
PCDHA1Q9Y5I3 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
PCDHA1Q9Y5I3 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
PCDHA1Q9Y5I3 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
PCDHA1Q9Y5I3 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC26.2■■□□□ 1.78
PCDHA1Q9Y5I3 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
PCDHA1Q9Y5I3 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
PCDHA1Q9Y5I3 USF2-207ENST00000595068 1612 ntTSL 5 BASIC26.19■■□□□ 1.78
PCDHA1Q9Y5I3 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
PCDHA1Q9Y5I3 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
PCDHA1Q9Y5I3 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC26.19■■□□□ 1.78
PCDHA1Q9Y5I3 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
PCDHA1Q9Y5I3 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
PCDHA1Q9Y5I3 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
PCDHA1Q9Y5I3 SRD5A1P1-201ENST00000442297 786 ntBASIC26.18■■□□□ 1.78
PCDHA1Q9Y5I3 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC26.18■■□□□ 1.78
PCDHA1Q9Y5I3 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
PCDHA1Q9Y5I3 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC26.18■■□□□ 1.78
PCDHA1Q9Y5I3 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC26.18■■□□□ 1.78
PCDHA1Q9Y5I3 LINC00543-201ENST00000567234 1845 ntBASIC26.18■■□□□ 1.78
PCDHA1Q9Y5I3 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
PCDHA1Q9Y5I3 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
PCDHA1Q9Y5I3 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
PCDHA1Q9Y5I3 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC26.18■■□□□ 1.78
PCDHA1Q9Y5I3 AC009102.2-201ENST00000606772 1639 ntBASIC26.17■■□□□ 1.78
PCDHA1Q9Y5I3 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC26.17■■□□□ 1.78
PCDHA1Q9Y5I3 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
PCDHA1Q9Y5I3 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC26.17■■□□□ 1.78
PCDHA1Q9Y5I3 GATM-206ENST00000558336 1522 ntTSL 2 BASIC26.17■■□□□ 1.78
PCDHA1Q9Y5I3 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
PCDHA1Q9Y5I3 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC26.16■■□□□ 1.78
PCDHA1Q9Y5I3 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
PCDHA1Q9Y5I3 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
PCDHA1Q9Y5I3 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
PCDHA1Q9Y5I3 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
PCDHA1Q9Y5I3 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC26.16■■□□□ 1.78
PCDHA1Q9Y5I3 AC141586.4-201ENST00000624558 1573 ntBASIC26.16■■□□□ 1.78
PCDHA1Q9Y5I3 NALT1-201ENST00000429224 738 ntTSL 5 BASIC26.15■■□□□ 1.78
PCDHA1Q9Y5I3 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC26.15■■□□□ 1.78
PCDHA1Q9Y5I3 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
PCDHA1Q9Y5I3 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC26.14■■□□□ 1.78
PCDHA1Q9Y5I3 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
PCDHA1Q9Y5I3 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
PCDHA1Q9Y5I3 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
PCDHA1Q9Y5I3 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC26.14■■□□□ 1.78
PCDHA1Q9Y5I3 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC26.14■■□□□ 1.78
PCDHA1Q9Y5I3 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
PCDHA1Q9Y5I3 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC26.14■■□□□ 1.77
PCDHA1Q9Y5I3 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
PCDHA1Q9Y5I3 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
PCDHA1Q9Y5I3 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
PCDHA1Q9Y5I3 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC26.14■■□□□ 1.77
PCDHA1Q9Y5I3 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC26.14■■□□□ 1.77
PCDHA1Q9Y5I3 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
PCDHA1Q9Y5I3 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
PCDHA1Q9Y5I3 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC26.13■■□□□ 1.77
PCDHA1Q9Y5I3 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
PCDHA1Q9Y5I3 AC096631.2-201ENST00000436136 790 ntBASIC26.13■■□□□ 1.77
PCDHA1Q9Y5I3 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC26.13■■□□□ 1.77
PCDHA1Q9Y5I3 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
PCDHA1Q9Y5I3 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC26.13■■□□□ 1.77
PCDHA1Q9Y5I3 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC26.12■■□□□ 1.77
PCDHA1Q9Y5I3 EI24-213ENST00000618552 1747 ntTSL 5 BASIC26.12■■□□□ 1.77
PCDHA1Q9Y5I3 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
PCDHA1Q9Y5I3 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC26.12■■□□□ 1.77
PCDHA1Q9Y5I3 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC26.12■■□□□ 1.77
PCDHA1Q9Y5I3 AL139246.5-201ENST00000606645 996 ntBASIC26.12■■□□□ 1.77
PCDHA1Q9Y5I3 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
PCDHA1Q9Y5I3 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
PCDHA1Q9Y5I3 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
PCDHA1Q9Y5I3 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC26.12■■□□□ 1.77
PCDHA1Q9Y5I3 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC26.12■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms