Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC26.37■■□□□ 1.81
PCDHA1Q9Y5I3 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PCDHA1Q9Y5I3 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
PCDHA1Q9Y5I3 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC26.37■■□□□ 1.81
PCDHA1Q9Y5I3 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC26.37■■□□□ 1.81
PCDHA1Q9Y5I3 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC26.37■■□□□ 1.81
PCDHA1Q9Y5I3 AL512631.2-201ENST00000604634 923 ntBASIC26.37■■□□□ 1.81
PCDHA1Q9Y5I3 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC26.37■■□□□ 1.81
PCDHA1Q9Y5I3 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PCDHA1Q9Y5I3 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PCDHA1Q9Y5I3 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
PCDHA1Q9Y5I3 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
PCDHA1Q9Y5I3 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
PCDHA1Q9Y5I3 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC26.36■■□□□ 1.81
PCDHA1Q9Y5I3 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
PCDHA1Q9Y5I3 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
PCDHA1Q9Y5I3 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
PCDHA1Q9Y5I3 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
PCDHA1Q9Y5I3 MIR4466-201ENST00000606121 54 ntBASIC26.36■■□□□ 1.81
PCDHA1Q9Y5I3 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC26.36■■□□□ 1.81
PCDHA1Q9Y5I3 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
PCDHA1Q9Y5I3 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
PCDHA1Q9Y5I3 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
PCDHA1Q9Y5I3 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PCDHA1Q9Y5I3 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
PCDHA1Q9Y5I3 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
PCDHA1Q9Y5I3 EED-207ENST00000528180 1745 ntTSL 5 BASIC26.35■■□□□ 1.81
PCDHA1Q9Y5I3 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PCDHA1Q9Y5I3 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHA1Q9Y5I3 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC26.34■■□□□ 1.81
PCDHA1Q9Y5I3 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHA1Q9Y5I3 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHA1Q9Y5I3 AL136116.3-201ENST00000402907 1138 ntBASIC26.34■■□□□ 1.81
PCDHA1Q9Y5I3 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHA1Q9Y5I3 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHA1Q9Y5I3 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PCDHA1Q9Y5I3 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PCDHA1Q9Y5I3 MTURN-203ENST00000409688 843 ntTSL 2 BASIC26.33■■□□□ 1.81
PCDHA1Q9Y5I3 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC26.33■■□□□ 1.81
PCDHA1Q9Y5I3 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC26.33■■□□□ 1.81
PCDHA1Q9Y5I3 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PCDHA1Q9Y5I3 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
PCDHA1Q9Y5I3 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PCDHA1Q9Y5I3 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
PCDHA1Q9Y5I3 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
PCDHA1Q9Y5I3 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
PCDHA1Q9Y5I3 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC26.31■■□□□ 1.8
PCDHA1Q9Y5I3 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC26.31■■□□□ 1.8
PCDHA1Q9Y5I3 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
PCDHA1Q9Y5I3 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC26.31■■□□□ 1.8
PCDHA1Q9Y5I3 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PCDHA1Q9Y5I3 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PCDHA1Q9Y5I3 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC26.3■■□□□ 1.8
PCDHA1Q9Y5I3 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC26.3■■□□□ 1.8
PCDHA1Q9Y5I3 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC26.3■■□□□ 1.8
PCDHA1Q9Y5I3 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
PCDHA1Q9Y5I3 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
PCDHA1Q9Y5I3 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
PCDHA1Q9Y5I3 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
PCDHA1Q9Y5I3 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC26.3■■□□□ 1.8
PCDHA1Q9Y5I3 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC26.3■■□□□ 1.8
PCDHA1Q9Y5I3 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
PCDHA1Q9Y5I3 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHA1Q9Y5I3 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHA1Q9Y5I3 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHA1Q9Y5I3 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHA1Q9Y5I3 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHA1Q9Y5I3 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHA1Q9Y5I3 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC26.29■■□□□ 1.8
PCDHA1Q9Y5I3 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
PCDHA1Q9Y5I3 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
PCDHA1Q9Y5I3 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PCDHA1Q9Y5I3 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
PCDHA1Q9Y5I3 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
PCDHA1Q9Y5I3 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PCDHA1Q9Y5I3 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC26.28■■□□□ 1.8
PCDHA1Q9Y5I3 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC26.27■■□□□ 1.8
PCDHA1Q9Y5I3 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC26.27■■□□□ 1.8
PCDHA1Q9Y5I3 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC26.27■■□□□ 1.8
PCDHA1Q9Y5I3 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC26.27■■□□□ 1.8
PCDHA1Q9Y5I3 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
PCDHA1Q9Y5I3 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PCDHA1Q9Y5I3 ALDH1A3-203ENST00000557963 1670 ntBASIC26.27■■□□□ 1.8
PCDHA1Q9Y5I3 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PCDHA1Q9Y5I3 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
PCDHA1Q9Y5I3 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PCDHA1Q9Y5I3 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PCDHA1Q9Y5I3 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PCDHA1Q9Y5I3 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
PCDHA1Q9Y5I3 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC26.26■■□□□ 1.79
PCDHA1Q9Y5I3 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
PCDHA1Q9Y5I3 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
PCDHA1Q9Y5I3 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PCDHA1Q9Y5I3 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC26.26■■□□□ 1.79
PCDHA1Q9Y5I3 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PCDHA1Q9Y5I3 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PCDHA1Q9Y5I3 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
PCDHA1Q9Y5I3 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
PCDHA1Q9Y5I3 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC26.25■■□□□ 1.79
PCDHA1Q9Y5I3 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms