Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHGA3Q9Y5H0 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHGA3Q9Y5H0 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
PCDHGA3Q9Y5H0 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHGA3Q9Y5H0 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHGA3Q9Y5H0 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC22.1■■□□□ 1.13
PCDHGA3Q9Y5H0 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA3Q9Y5H0 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA3Q9Y5H0 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA3Q9Y5H0 PBX2P1-201ENST00000493219 1291 ntBASIC22.09■■□□□ 1.13
PCDHGA3Q9Y5H0 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC22.09■■□□□ 1.13
PCDHGA3Q9Y5H0 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA3Q9Y5H0 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC22.09■■□□□ 1.13
PCDHGA3Q9Y5H0 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC22.09■■□□□ 1.13
PCDHGA3Q9Y5H0 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA3Q9Y5H0 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA3Q9Y5H0 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC22.09■■□□□ 1.13
PCDHGA3Q9Y5H0 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA3Q9Y5H0 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA3Q9Y5H0 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA3Q9Y5H0 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC22.08■■□□□ 1.13
PCDHGA3Q9Y5H0 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHGA3Q9Y5H0 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHGA3Q9Y5H0 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
PCDHGA3Q9Y5H0 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA3Q9Y5H0 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA3Q9Y5H0 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA3Q9Y5H0 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA3Q9Y5H0 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA3Q9Y5H0 EBPL-204ENST00000378272 766 ntTSL 3 BASIC22.07■■□□□ 1.12
PCDHGA3Q9Y5H0 AC004448.1-201ENST00000458332 883 ntBASIC22.07■■□□□ 1.12
PCDHGA3Q9Y5H0 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC22.07■■□□□ 1.12
PCDHGA3Q9Y5H0 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHGA3Q9Y5H0 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC22.06■■□□□ 1.12
PCDHGA3Q9Y5H0 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHGA3Q9Y5H0 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC22.06■■□□□ 1.12
PCDHGA3Q9Y5H0 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC22.06■■□□□ 1.12
PCDHGA3Q9Y5H0 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC22.06■■□□□ 1.12
PCDHGA3Q9Y5H0 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHGA3Q9Y5H0 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC22.06■■□□□ 1.12
PCDHGA3Q9Y5H0 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
PCDHGA3Q9Y5H0 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHGA3Q9Y5H0 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHGA3Q9Y5H0 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
PCDHGA3Q9Y5H0 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC22.06■■□□□ 1.12
PCDHGA3Q9Y5H0 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
PCDHGA3Q9Y5H0 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC22.05■■□□□ 1.12
PCDHGA3Q9Y5H0 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
PCDHGA3Q9Y5H0 SRD5A1P1-201ENST00000442297 786 ntBASIC22.05■■□□□ 1.12
PCDHGA3Q9Y5H0 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHGA3Q9Y5H0 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC22.05■■□□□ 1.12
PCDHGA3Q9Y5H0 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC22.05■■□□□ 1.12
PCDHGA3Q9Y5H0 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHGA3Q9Y5H0 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHGA3Q9Y5H0 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHGA3Q9Y5H0 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHGA3Q9Y5H0 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHGA3Q9Y5H0 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
PCDHGA3Q9Y5H0 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHGA3Q9Y5H0 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHGA3Q9Y5H0 UNC93B3-201ENST00000308076 687 ntBASIC22.04■■□□□ 1.12
PCDHGA3Q9Y5H0 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC22.04■■□□□ 1.12
PCDHGA3Q9Y5H0 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC22.04■■□□□ 1.12
PCDHGA3Q9Y5H0 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
PCDHGA3Q9Y5H0 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
PCDHGA3Q9Y5H0 AC010501.1-201ENST00000606270 1962 ntBASIC22.04■■□□□ 1.12
PCDHGA3Q9Y5H0 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHGA3Q9Y5H0 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHGA3Q9Y5H0 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
PCDHGA3Q9Y5H0 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHGA3Q9Y5H0 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC22.03■■□□□ 1.12
PCDHGA3Q9Y5H0 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC22.03■■□□□ 1.12
PCDHGA3Q9Y5H0 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC22.03■■□□□ 1.12
PCDHGA3Q9Y5H0 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHGA3Q9Y5H0 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHGA3Q9Y5H0 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHGA3Q9Y5H0 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHGA3Q9Y5H0 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHGA3Q9Y5H0 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
PCDHGA3Q9Y5H0 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHGA3Q9Y5H0 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHGA3Q9Y5H0 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHGA3Q9Y5H0 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHGA3Q9Y5H0 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHGA3Q9Y5H0 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
PCDHGA3Q9Y5H0 AC142381.2-201ENST00000566120 298 ntBASIC22.02■■□□□ 1.12
PCDHGA3Q9Y5H0 AL136162.1-201ENST00000607711 1078 ntBASIC22.02■■□□□ 1.12
PCDHGA3Q9Y5H0 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
PCDHGA3Q9Y5H0 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC22.02■■□□□ 1.12
PCDHGA3Q9Y5H0 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHGA3Q9Y5H0 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
PCDHGA3Q9Y5H0 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHGA3Q9Y5H0 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
PCDHGA3Q9Y5H0 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHGA3Q9Y5H0 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHGA3Q9Y5H0 SUDS3P1-201ENST00000505831 966 ntBASIC22.01■■□□□ 1.11
PCDHGA3Q9Y5H0 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHGA3Q9Y5H0 AL031432.3-201ENST00000607698 485 ntBASIC22.01■■□□□ 1.11
PCDHGA3Q9Y5H0 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC22.01■■□□□ 1.11
PCDHGA3Q9Y5H0 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms