Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.75■■□□□ 1.07
VMP1Q96GC9 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VMP1Q96GC9 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.74■■□□□ 1.07
VMP1Q96GC9 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.74■■□□□ 1.07
VMP1Q96GC9 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VMP1Q96GC9 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
VMP1Q96GC9 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VMP1Q96GC9 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
VMP1Q96GC9 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VMP1Q96GC9 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VMP1Q96GC9 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VMP1Q96GC9 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VMP1Q96GC9 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VMP1Q96GC9 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VMP1Q96GC9 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VMP1Q96GC9 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VMP1Q96GC9 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VMP1Q96GC9 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
VMP1Q96GC9 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VMP1Q96GC9 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.72■■□□□ 1.07
VMP1Q96GC9 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VMP1Q96GC9 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VMP1Q96GC9 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VMP1Q96GC9 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VMP1Q96GC9 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VMP1Q96GC9 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
VMP1Q96GC9 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VMP1Q96GC9 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VMP1Q96GC9 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VMP1Q96GC9 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VMP1Q96GC9 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VMP1Q96GC9 GUSBP5-201ENST00000418136 578 ntBASIC21.71■■□□□ 1.07
VMP1Q96GC9 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.71■■□□□ 1.07
VMP1Q96GC9 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.71■■□□□ 1.07
VMP1Q96GC9 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.71■■□□□ 1.07
VMP1Q96GC9 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.71■■□□□ 1.07
VMP1Q96GC9 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VMP1Q96GC9 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VMP1Q96GC9 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VMP1Q96GC9 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.71■■□□□ 1.07
VMP1Q96GC9 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VMP1Q96GC9 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
VMP1Q96GC9 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.7■■□□□ 1.06
VMP1Q96GC9 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.7■■□□□ 1.06
VMP1Q96GC9 MIR4787-201ENST00000607364 84 ntBASIC21.7■■□□□ 1.06
VMP1Q96GC9 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.7■■□□□ 1.06
VMP1Q96GC9 AC021242.3-201ENST00000607598 1377 ntBASIC21.7■■□□□ 1.06
VMP1Q96GC9 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VMP1Q96GC9 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
VMP1Q96GC9 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.69■■□□□ 1.06
VMP1Q96GC9 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.69■■□□□ 1.06
VMP1Q96GC9 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.69■■□□□ 1.06
VMP1Q96GC9 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.69■■□□□ 1.06
VMP1Q96GC9 MIR6089-201ENST00000616698 64 ntBASIC21.69■■□□□ 1.06
VMP1Q96GC9 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VMP1Q96GC9 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VMP1Q96GC9 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.69■■□□□ 1.06
VMP1Q96GC9 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
VMP1Q96GC9 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
VMP1Q96GC9 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.68■■□□□ 1.06
VMP1Q96GC9 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VMP1Q96GC9 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.68■■□□□ 1.06
VMP1Q96GC9 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VMP1Q96GC9 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VMP1Q96GC9 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
VMP1Q96GC9 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.68■■□□□ 1.06
VMP1Q96GC9 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VMP1Q96GC9 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
VMP1Q96GC9 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.67■■□□□ 1.06
VMP1Q96GC9 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VMP1Q96GC9 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VMP1Q96GC9 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.67■■□□□ 1.06
VMP1Q96GC9 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.67■■□□□ 1.06
VMP1Q96GC9 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VMP1Q96GC9 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
VMP1Q96GC9 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VMP1Q96GC9 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.66■■□□□ 1.06
VMP1Q96GC9 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VMP1Q96GC9 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VMP1Q96GC9 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VMP1Q96GC9 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VMP1Q96GC9 AF131216.4-201ENST00000638924 1588 ntBASIC21.65■■□□□ 1.06
VMP1Q96GC9 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VMP1Q96GC9 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.65■■□□□ 1.06
VMP1Q96GC9 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VMP1Q96GC9 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.65■■□□□ 1.06
VMP1Q96GC9 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.64■■□□□ 1.05
VMP1Q96GC9 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.64■■□□□ 1.05
VMP1Q96GC9 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
VMP1Q96GC9 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VMP1Q96GC9 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
VMP1Q96GC9 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VMP1Q96GC9 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VMP1Q96GC9 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.63■■□□□ 1.05
VMP1Q96GC9 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.63■■□□□ 1.05
VMP1Q96GC9 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
VMP1Q96GC9 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.63■■□□□ 1.05
VMP1Q96GC9 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.63■■□□□ 1.05
VMP1Q96GC9 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
VMP1Q96GC9 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms