Protein–RNA interactions for Protein: Q96A99

PTX4, Pentraxin-4, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4Q96A99 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTX4Q96A99 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTX4Q96A99 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTX4Q96A99 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTX4Q96A99 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
PTX4Q96A99 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC19.54■□□□□ 0.72
PTX4Q96A99 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC19.54■□□□□ 0.72
PTX4Q96A99 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTX4Q96A99 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTX4Q96A99 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
PTX4Q96A99 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
PTX4Q96A99 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC19.54■□□□□ 0.72
PTX4Q96A99 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PTX4Q96A99 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.54■□□□□ 0.72
PTX4Q96A99 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTX4Q96A99 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PTX4Q96A99 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTX4Q96A99 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTX4Q96A99 EP400NL-214ENST00000641289 2402 ntBASIC19.53■□□□□ 0.72
PTX4Q96A99 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
PTX4Q96A99 C1orf229-201ENST00000623686 2258 ntBASIC19.53■□□□□ 0.72
PTX4Q96A99 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PTX4Q96A99 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.53■□□□□ 0.72
PTX4Q96A99 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTX4Q96A99 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTX4Q96A99 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTX4Q96A99 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTX4Q96A99 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC19.53■□□□□ 0.72
PTX4Q96A99 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.53■□□□□ 0.72
PTX4Q96A99 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC19.53■□□□□ 0.72
PTX4Q96A99 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
PTX4Q96A99 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
PTX4Q96A99 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTX4Q96A99 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTX4Q96A99 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTX4Q96A99 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
PTX4Q96A99 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTX4Q96A99 LINC00526-201ENST00000581067 1875 ntBASIC19.52■□□□□ 0.72
PTX4Q96A99 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTX4Q96A99 HES4-202ENST00000428771 1040 ntTSL 2 BASIC19.52■□□□□ 0.72
PTX4Q96A99 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC19.52■□□□□ 0.72
PTX4Q96A99 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTX4Q96A99 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
PTX4Q96A99 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
PTX4Q96A99 ECEL1P1-201ENST00000373592 1742 ntBASIC19.51■□□□□ 0.71
PTX4Q96A99 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
PTX4Q96A99 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC19.51■□□□□ 0.71
PTX4Q96A99 MIR4449-201ENST00000578365 66 ntBASIC19.51■□□□□ 0.71
PTX4Q96A99 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
PTX4Q96A99 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.51■□□□□ 0.71
PTX4Q96A99 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTX4Q96A99 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTX4Q96A99 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
PTX4Q96A99 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
PTX4Q96A99 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTX4Q96A99 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC19.51■□□□□ 0.71
PTX4Q96A99 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
PTX4Q96A99 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC19.5■□□□□ 0.71
PTX4Q96A99 GUSBP5-202ENST00000510805 1989 ntBASIC19.5■□□□□ 0.71
PTX4Q96A99 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTX4Q96A99 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTX4Q96A99 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.5■□□□□ 0.71
PTX4Q96A99 CEP120-209ENST00000515110 606 ntTSL 3 BASIC19.5■□□□□ 0.71
PTX4Q96A99 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.5■□□□□ 0.71
PTX4Q96A99 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTX4Q96A99 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
PTX4Q96A99 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PTX4Q96A99 LINC00565-201ENST00000562710 2331 ntBASIC19.5■□□□□ 0.71
PTX4Q96A99 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTX4Q96A99 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.49■□□□□ 0.71
PTX4Q96A99 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
PTX4Q96A99 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PTX4Q96A99 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTX4Q96A99 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTX4Q96A99 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTX4Q96A99 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTX4Q96A99 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
PTX4Q96A99 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTX4Q96A99 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PTX4Q96A99 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTX4Q96A99 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTX4Q96A99 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTX4Q96A99 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
PTX4Q96A99 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTX4Q96A99 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTX4Q96A99 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PTX4Q96A99 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTX4Q96A99 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTX4Q96A99 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTX4Q96A99 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTX4Q96A99 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.48■□□□□ 0.71
PTX4Q96A99 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTX4Q96A99 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTX4Q96A99 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC19.48■□□□□ 0.71
PTX4Q96A99 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTX4Q96A99 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.47■□□□□ 0.71
PTX4Q96A99 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTX4Q96A99 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
PTX4Q96A99 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC19.47■□□□□ 0.71
PTX4Q96A99 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms