Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF404Q494X3 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF404Q494X3 SMPD5-203ENST00000639008 1464 ntBASIC20.62■□□□□ 0.89
ZNF404Q494X3 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
ZNF404Q494X3 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.62■□□□□ 0.89
ZNF404Q494X3 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF404Q494X3 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF404Q494X3 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.61■□□□□ 0.89
ZNF404Q494X3 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.61■□□□□ 0.89
ZNF404Q494X3 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF404Q494X3 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF404Q494X3 AC025884.2-201ENST00000553429 711 ntBASIC20.61■□□□□ 0.89
ZNF404Q494X3 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF404Q494X3 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF404Q494X3 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF404Q494X3 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.61■□□□□ 0.89
ZNF404Q494X3 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
ZNF404Q494X3 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF404Q494X3 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF404Q494X3 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC20.6■□□□□ 0.89
ZNF404Q494X3 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF404Q494X3 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF404Q494X3 AL359504.2-201ENST00000605506 1601 ntBASIC20.6■□□□□ 0.89
ZNF404Q494X3 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF404Q494X3 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
ZNF404Q494X3 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF404Q494X3 GUSBP5-202ENST00000510805 1989 ntBASIC20.59■□□□□ 0.89
ZNF404Q494X3 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF404Q494X3 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC20.59■□□□□ 0.89
ZNF404Q494X3 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.59■□□□□ 0.89
ZNF404Q494X3 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
ZNF404Q494X3 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
ZNF404Q494X3 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF404Q494X3 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF404Q494X3 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.59■□□□□ 0.89
ZNF404Q494X3 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.58■□□□□ 0.89
ZNF404Q494X3 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF404Q494X3 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.58■□□□□ 0.89
ZNF404Q494X3 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF404Q494X3 AC007029.1-201ENST00000604183 313 ntBASIC20.58■□□□□ 0.89
ZNF404Q494X3 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF404Q494X3 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
ZNF404Q494X3 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
ZNF404Q494X3 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
ZNF404Q494X3 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
ZNF404Q494X3 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
ZNF404Q494X3 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.58■□□□□ 0.88
ZNF404Q494X3 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.57■□□□□ 0.88
ZNF404Q494X3 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF404Q494X3 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF404Q494X3 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
ZNF404Q494X3 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF404Q494X3 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.57■□□□□ 0.88
ZNF404Q494X3 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.57■□□□□ 0.88
ZNF404Q494X3 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.57■□□□□ 0.88
ZNF404Q494X3 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF404Q494X3 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF404Q494X3 PKD1P6-201ENST00000343738 4769 ntBASIC20.57■□□□□ 0.88
ZNF404Q494X3 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF404Q494X3 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.56■□□□□ 0.88
ZNF404Q494X3 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF404Q494X3 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
ZNF404Q494X3 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
ZNF404Q494X3 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
ZNF404Q494X3 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.56■□□□□ 0.88
ZNF404Q494X3 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF404Q494X3 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF404Q494X3 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF404Q494X3 ECEL1P1-201ENST00000373592 1742 ntBASIC20.56■□□□□ 0.88
ZNF404Q494X3 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.55■□□□□ 0.88
ZNF404Q494X3 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF404Q494X3 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF404Q494X3 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF404Q494X3 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF404Q494X3 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF404Q494X3 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.55■□□□□ 0.88
ZNF404Q494X3 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.55■□□□□ 0.88
ZNF404Q494X3 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF404Q494X3 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF404Q494X3 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF404Q494X3 FOXO3B-201ENST00000395675 1928 ntBASIC20.55■□□□□ 0.88
ZNF404Q494X3 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF404Q494X3 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF404Q494X3 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF404Q494X3 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF404Q494X3 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF404Q494X3 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF404Q494X3 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF404Q494X3 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF404Q494X3 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
ZNF404Q494X3 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC20.54■□□□□ 0.88
ZNF404Q494X3 MIR6089-201ENST00000616698 64 ntBASIC20.54■□□□□ 0.88
ZNF404Q494X3 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF404Q494X3 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF404Q494X3 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF404Q494X3 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF404Q494X3 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF404Q494X3 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
ZNF404Q494X3 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
ZNF404Q494X3 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms