Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ZIC3O60481 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZIC3O60481 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZIC3O60481 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZIC3O60481 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.71■□□□□ 0.91
ZIC3O60481 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ZIC3O60481 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.71■□□□□ 0.91
ZIC3O60481 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.71■□□□□ 0.91
ZIC3O60481 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.71■□□□□ 0.91
ZIC3O60481 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZIC3O60481 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
ZIC3O60481 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
ZIC3O60481 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
ZIC3O60481 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
ZIC3O60481 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZIC3O60481 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZIC3O60481 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZIC3O60481 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.7■□□□□ 0.9
ZIC3O60481 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.7■□□□□ 0.9
ZIC3O60481 AL356740.2-201ENST00000601559 647 ntBASIC20.7■□□□□ 0.9
ZIC3O60481 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.7■□□□□ 0.9
ZIC3O60481 AC005703.6-201ENST00000623265 1329 ntBASIC20.7■□□□□ 0.9
ZIC3O60481 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZIC3O60481 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ZIC3O60481 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZIC3O60481 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.69■□□□□ 0.9
ZIC3O60481 AC141586.4-201ENST00000624558 1573 ntBASIC20.69■□□□□ 0.9
ZIC3O60481 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.69■□□□□ 0.9
ZIC3O60481 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.69■□□□□ 0.9
ZIC3O60481 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
ZIC3O60481 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.69■□□□□ 0.9
ZIC3O60481 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZIC3O60481 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
ZIC3O60481 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.69■□□□□ 0.9
ZIC3O60481 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ZIC3O60481 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.68■□□□□ 0.9
ZIC3O60481 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZIC3O60481 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZIC3O60481 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.68■□□□□ 0.9
ZIC3O60481 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.68■□□□□ 0.9
ZIC3O60481 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZIC3O60481 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZIC3O60481 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.68■□□□□ 0.9
ZIC3O60481 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.68■□□□□ 0.9
ZIC3O60481 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZIC3O60481 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
ZIC3O60481 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZIC3O60481 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.67■□□□□ 0.9
ZIC3O60481 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.67■□□□□ 0.9
ZIC3O60481 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZIC3O60481 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ZIC3O60481 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZIC3O60481 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZIC3O60481 ALDH1A3-203ENST00000557963 1670 ntBASIC20.67■□□□□ 0.9
ZIC3O60481 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.66■□□□□ 0.9
ZIC3O60481 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
ZIC3O60481 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZIC3O60481 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.66■□□□□ 0.9
ZIC3O60481 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZIC3O60481 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.66■□□□□ 0.9
ZIC3O60481 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.66■□□□□ 0.9
ZIC3O60481 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.66■□□□□ 0.9
ZIC3O60481 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ZIC3O60481 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZIC3O60481 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZIC3O60481 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.66■□□□□ 0.9
ZIC3O60481 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
ZIC3O60481 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZIC3O60481 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ZIC3O60481 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.65■□□□□ 0.9
ZIC3O60481 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.65■□□□□ 0.9
ZIC3O60481 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ZIC3O60481 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZIC3O60481 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ZIC3O60481 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
ZIC3O60481 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
ZIC3O60481 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
ZIC3O60481 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.64■□□□□ 0.89
ZIC3O60481 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.64■□□□□ 0.89
ZIC3O60481 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.64■□□□□ 0.89
ZIC3O60481 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ZIC3O60481 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
ZIC3O60481 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZIC3O60481 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZIC3O60481 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZIC3O60481 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
ZIC3O60481 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZIC3O60481 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
ZIC3O60481 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.63■□□□□ 0.89
ZIC3O60481 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.63■□□□□ 0.89
ZIC3O60481 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.63■□□□□ 0.89
ZIC3O60481 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZIC3O60481 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ZIC3O60481 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ZIC3O60481 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
ZIC3O60481 AC004812.2-201ENST00000611079 2094 ntBASIC20.62■□□□□ 0.89
ZIC3O60481 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
ZIC3O60481 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZIC3O60481 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ZIC3O60481 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms