Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LGR4-203ENST00000480977 492 ntTSL 2 BASIC23.16■■□□□ 1.3
HDDC3Q8N4P3 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
HDDC3Q8N4P3 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC23.16■■□□□ 1.3
HDDC3Q8N4P3 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HDDC3Q8N4P3 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
HDDC3Q8N4P3 AC005703.6-201ENST00000623265 1329 ntBASIC23.15■■□□□ 1.3
HDDC3Q8N4P3 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
HDDC3Q8N4P3 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
HDDC3Q8N4P3 MIR5787-201ENST00000611784 55 ntBASIC23.15■■□□□ 1.3
HDDC3Q8N4P3 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
HDDC3Q8N4P3 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
HDDC3Q8N4P3 AC104564.3-201ENST00000582367 638 ntBASIC23.14■■□□□ 1.29
HDDC3Q8N4P3 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC23.14■■□□□ 1.29
HDDC3Q8N4P3 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
HDDC3Q8N4P3 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC23.14■■□□□ 1.29
HDDC3Q8N4P3 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC23.14■■□□□ 1.29
HDDC3Q8N4P3 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC23.14■■□□□ 1.29
HDDC3Q8N4P3 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.14■■□□□ 1.29
HDDC3Q8N4P3 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
HDDC3Q8N4P3 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC23.13■■□□□ 1.29
HDDC3Q8N4P3 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC23.13■■□□□ 1.29
HDDC3Q8N4P3 REST-206ENST00000612429 1376 ntTSL 5 BASIC23.13■■□□□ 1.29
HDDC3Q8N4P3 REST-207ENST00000616975 1370 ntTSL 5 BASIC23.13■■□□□ 1.29
HDDC3Q8N4P3 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
HDDC3Q8N4P3 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HDDC3Q8N4P3 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
HDDC3Q8N4P3 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HDDC3Q8N4P3 UNC93B3-201ENST00000308076 687 ntBASIC23.12■■□□□ 1.29
HDDC3Q8N4P3 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC23.12■■□□□ 1.29
HDDC3Q8N4P3 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC23.12■■□□□ 1.29
HDDC3Q8N4P3 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HDDC3Q8N4P3 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC23.12■■□□□ 1.29
HDDC3Q8N4P3 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
HDDC3Q8N4P3 AC135279.3-201ENST00000610945 1311 ntBASIC23.11■■□□□ 1.29
HDDC3Q8N4P3 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HDDC3Q8N4P3 AL136162.1-201ENST00000607711 1078 ntBASIC23.11■■□□□ 1.29
HDDC3Q8N4P3 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC23.11■■□□□ 1.29
HDDC3Q8N4P3 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HDDC3Q8N4P3 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HDDC3Q8N4P3 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HDDC3Q8N4P3 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
HDDC3Q8N4P3 AL022069.1-201ENST00000568025 1636 ntBASIC23.11■■□□□ 1.29
HDDC3Q8N4P3 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HDDC3Q8N4P3 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
HDDC3Q8N4P3 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HDDC3Q8N4P3 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HDDC3Q8N4P3 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HDDC3Q8N4P3 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
HDDC3Q8N4P3 AC026271.2-201ENST00000428091 497 ntBASIC23.1■■□□□ 1.29
HDDC3Q8N4P3 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC23.1■■□□□ 1.29
HDDC3Q8N4P3 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
HDDC3Q8N4P3 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HDDC3Q8N4P3 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HDDC3Q8N4P3 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
HDDC3Q8N4P3 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HDDC3Q8N4P3 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
HDDC3Q8N4P3 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
HDDC3Q8N4P3 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
HDDC3Q8N4P3 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HDDC3Q8N4P3 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
HDDC3Q8N4P3 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HDDC3Q8N4P3 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
HDDC3Q8N4P3 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC23.08■■□□□ 1.29
HDDC3Q8N4P3 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HDDC3Q8N4P3 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
HDDC3Q8N4P3 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
HDDC3Q8N4P3 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC23.08■■□□□ 1.29
HDDC3Q8N4P3 SRD5A1P1-201ENST00000442297 786 ntBASIC23.08■■□□□ 1.29
HDDC3Q8N4P3 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC23.08■■□□□ 1.29
HDDC3Q8N4P3 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC23.08■■□□□ 1.29
HDDC3Q8N4P3 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC23.08■■□□□ 1.29
HDDC3Q8N4P3 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
HDDC3Q8N4P3 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC23.08■■□□□ 1.28
HDDC3Q8N4P3 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
HDDC3Q8N4P3 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC23.07■■□□□ 1.28
HDDC3Q8N4P3 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
HDDC3Q8N4P3 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC23.07■■□□□ 1.28
HDDC3Q8N4P3 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
HDDC3Q8N4P3 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
HDDC3Q8N4P3 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
HDDC3Q8N4P3 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
HDDC3Q8N4P3 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
HDDC3Q8N4P3 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HDDC3Q8N4P3 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
HDDC3Q8N4P3 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC23.06■■□□□ 1.28
HDDC3Q8N4P3 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HDDC3Q8N4P3 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HDDC3Q8N4P3 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
HDDC3Q8N4P3 EDA-201ENST00000338901 1233 ntBASIC23.05■■□□□ 1.28
HDDC3Q8N4P3 HYI-206ENST00000372434 1025 ntTSL 5 BASIC23.05■■□□□ 1.28
HDDC3Q8N4P3 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
HDDC3Q8N4P3 SUDS3P1-201ENST00000505831 966 ntBASIC23.05■■□□□ 1.28
HDDC3Q8N4P3 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC23.05■■□□□ 1.28
HDDC3Q8N4P3 AL355001.2-201ENST00000620617 1191 ntBASIC23.05■■□□□ 1.28
HDDC3Q8N4P3 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HDDC3Q8N4P3 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.05■■□□□ 1.28
HDDC3Q8N4P3 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC23.04■■□□□ 1.28
HDDC3Q8N4P3 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
HDDC3Q8N4P3 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC23.04■■□□□ 1.28
HDDC3Q8N4P3 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms