Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC23.9■■□□□ 1.42
CDH6P55285 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CDH6P55285 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
CDH6P55285 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CDH6P55285 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CDH6P55285 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CDH6P55285 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC23.9■■□□□ 1.42
CDH6P55285 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC23.9■■□□□ 1.42
CDH6P55285 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC23.9■■□□□ 1.42
CDH6P55285 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
CDH6P55285 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CDH6P55285 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
CDH6P55285 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
CDH6P55285 MIR4281-201ENST00000580852 62 ntBASIC23.89■■□□□ 1.41
CDH6P55285 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CDH6P55285 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CDH6P55285 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CDH6P55285 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.88■■□□□ 1.41
CDH6P55285 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CDH6P55285 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CDH6P55285 AL161729.1-201ENST00000604104 1402 ntBASIC23.88■■□□□ 1.41
CDH6P55285 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CDH6P55285 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CDH6P55285 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CDH6P55285 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.88■■□□□ 1.41
CDH6P55285 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.88■■□□□ 1.41
CDH6P55285 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CDH6P55285 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
CDH6P55285 AL022069.1-201ENST00000568025 1636 ntBASIC23.88■■□□□ 1.41
CDH6P55285 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.88■■□□□ 1.41
CDH6P55285 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CDH6P55285 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CDH6P55285 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
CDH6P55285 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CDH6P55285 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CDH6P55285 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
CDH6P55285 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CDH6P55285 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
CDH6P55285 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC23.86■■□□□ 1.41
CDH6P55285 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CDH6P55285 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CDH6P55285 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CDH6P55285 YBX1P4-201ENST00000392794 808 ntBASIC23.86■■□□□ 1.41
CDH6P55285 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC23.86■■□□□ 1.41
CDH6P55285 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.86■■□□□ 1.41
CDH6P55285 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CDH6P55285 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CDH6P55285 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
CDH6P55285 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
CDH6P55285 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CDH6P55285 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
CDH6P55285 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
CDH6P55285 AC131274.2-201ENST00000580697 1507 ntBASIC23.85■■□□□ 1.41
CDH6P55285 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CDH6P55285 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CDH6P55285 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC23.85■■□□□ 1.41
CDH6P55285 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CDH6P55285 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CDH6P55285 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CDH6P55285 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
CDH6P55285 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CDH6P55285 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.84■■□□□ 1.41
CDH6P55285 AF131216.4-201ENST00000638924 1588 ntBASIC23.84■■□□□ 1.41
CDH6P55285 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC23.84■■□□□ 1.41
CDH6P55285 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CDH6P55285 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
CDH6P55285 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC23.84■■□□□ 1.41
CDH6P55285 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC23.83■■□□□ 1.41
CDH6P55285 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC23.83■■□□□ 1.41
CDH6P55285 AC103724.3-201ENST00000564481 992 ntBASIC23.83■■□□□ 1.41
CDH6P55285 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC23.83■■□□□ 1.41
CDH6P55285 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
CDH6P55285 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CDH6P55285 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
CDH6P55285 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
CDH6P55285 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CDH6P55285 LBH-205ENST00000407930 756 ntTSL 2 BASIC23.82■■□□□ 1.4
CDH6P55285 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC23.82■■□□□ 1.4
CDH6P55285 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC23.82■■□□□ 1.4
CDH6P55285 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
CDH6P55285 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC23.82■■□□□ 1.4
CDH6P55285 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CDH6P55285 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CDH6P55285 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
CDH6P55285 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
CDH6P55285 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CDH6P55285 STK32C-205ENST00000456004 607 ntTSL 2 BASIC23.81■■□□□ 1.4
CDH6P55285 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.81■■□□□ 1.4
CDH6P55285 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
CDH6P55285 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CDH6P55285 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CDH6P55285 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CDH6P55285 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CDH6P55285 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC23.8■■□□□ 1.4
CDH6P55285 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CDH6P55285 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CDH6P55285 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CDH6P55285 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CDH6P55285 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
CDH6P55285 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC23.79■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms