Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC10.48□□□□□ -0.73
USH2AO75445 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC10.47□□□□□ -0.73
USH2AO75445 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC10.47□□□□□ -0.73
USH2AO75445 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
USH2AO75445 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
USH2AO75445 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
USH2AO75445 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
USH2AO75445 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
USH2AO75445 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC10.47□□□□□ -0.73
USH2AO75445 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
USH2AO75445 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC10.47□□□□□ -0.73
USH2AO75445 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC10.47□□□□□ -0.73
USH2AO75445 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC10.47□□□□□ -0.73
USH2AO75445 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC10.47□□□□□ -0.73
USH2AO75445 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
USH2AO75445 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
USH2AO75445 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC10.47□□□□□ -0.73
USH2AO75445 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC10.47□□□□□ -0.73
USH2AO75445 GRAMD4P2-201ENST00000423297 1097 ntBASIC10.47□□□□□ -0.73
USH2AO75445 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
USH2AO75445 CD99P1-205ENST00000527459 561 ntBASIC10.47□□□□□ -0.73
USH2AO75445 MPST-208ENST00000628507 698 ntTSL 5 BASIC10.47□□□□□ -0.73
USH2AO75445 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
USH2AO75445 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
USH2AO75445 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
USH2AO75445 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
USH2AO75445 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC10.46□□□□□ -0.73
USH2AO75445 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
USH2AO75445 NCF1B-203ENST00000435988 1254 ntBASIC10.46□□□□□ -0.73
USH2AO75445 AC006970.2-201ENST00000450065 779 ntBASIC10.46□□□□□ -0.73
USH2AO75445 AC012414.1-201ENST00000556676 535 ntBASIC10.46□□□□□ -0.73
USH2AO75445 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC10.46□□□□□ -0.73
USH2AO75445 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.73
USH2AO75445 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.73
USH2AO75445 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC10.46□□□□□ -0.73
USH2AO75445 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
USH2AO75445 AL109923.1-201ENST00000618799 583 ntBASIC10.46□□□□□ -0.74
USH2AO75445 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
USH2AO75445 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
USH2AO75445 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC10.46□□□□□ -0.74
USH2AO75445 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC10.46□□□□□ -0.74
USH2AO75445 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
USH2AO75445 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
USH2AO75445 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.74
USH2AO75445 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
USH2AO75445 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC10.45□□□□□ -0.74
USH2AO75445 NME4-202ENST00000382940 766 ntTSL 3 BASIC10.45□□□□□ -0.74
USH2AO75445 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC10.45□□□□□ -0.74
USH2AO75445 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC10.45□□□□□ -0.74
USH2AO75445 NME4-211ENST00000620944 1193 ntTSL 2 BASIC10.45□□□□□ -0.74
USH2AO75445 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC10.45□□□□□ -0.74
USH2AO75445 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
USH2AO75445 AC009102.2-201ENST00000606772 1639 ntBASIC10.45□□□□□ -0.74
USH2AO75445 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC10.45□□□□□ -0.74
USH2AO75445 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
USH2AO75445 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
USH2AO75445 AC026185.1-201ENST00000445748 174 ntBASIC10.45□□□□□ -0.74
USH2AO75445 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
USH2AO75445 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
USH2AO75445 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
USH2AO75445 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
USH2AO75445 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC10.45□□□□□ -0.74
USH2AO75445 PPP1R14BP3-201ENST00000509033 445 ntBASIC10.45□□□□□ -0.74
USH2AO75445 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC10.45□□□□□ -0.74
USH2AO75445 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
USH2AO75445 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC10.44□□□□□ -0.74
USH2AO75445 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC10.44□□□□□ -0.74
USH2AO75445 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC10.44□□□□□ -0.74
USH2AO75445 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC10.44□□□□□ -0.74
USH2AO75445 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
USH2AO75445 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC10.44□□□□□ -0.74
USH2AO75445 MIR3181-201ENST00000578512 73 ntBASIC10.44□□□□□ -0.74
USH2AO75445 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
USH2AO75445 STX7-201ENST00000367937 1090 ntTSL 5 BASIC10.44□□□□□ -0.74
USH2AO75445 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
USH2AO75445 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
USH2AO75445 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
USH2AO75445 BX842568.3-201ENST00000418104 571 ntBASIC10.44□□□□□ -0.74
USH2AO75445 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC10.44□□□□□ -0.74
USH2AO75445 AL138781.1-201ENST00000566567 1274 ntBASIC10.44□□□□□ -0.74
USH2AO75445 AC142086.2-201ENST00000569753 217 ntBASIC10.44□□□□□ -0.74
USH2AO75445 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC10.44□□□□□ -0.74
USH2AO75445 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC10.44□□□□□ -0.74
USH2AO75445 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
USH2AO75445 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
USH2AO75445 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC10.43□□□□□ -0.74
USH2AO75445 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC10.43□□□□□ -0.74
USH2AO75445 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC10.43□□□□□ -0.74
USH2AO75445 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC10.43□□□□□ -0.74
USH2AO75445 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC10.43□□□□□ -0.74
USH2AO75445 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC10.43□□□□□ -0.74
USH2AO75445 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
USH2AO75445 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
USH2AO75445 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
USH2AO75445 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC10.43□□□□□ -0.74
USH2AO75445 AP005435.1-201ENST00000529293 1178 ntBASIC10.43□□□□□ -0.74
USH2AO75445 AC139426.1-201ENST00000568218 2529 ntBASIC10.43□□□□□ -0.74
USH2AO75445 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC10.43□□□□□ -0.74
USH2AO75445 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC10.43□□□□□ -0.74
USH2AO75445 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms