Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
TIMP4Q99727 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TIMP4Q99727 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TIMP4Q99727 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TIMP4Q99727 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.21■□□□□ 0.99
TIMP4Q99727 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TIMP4Q99727 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TIMP4Q99727 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
TIMP4Q99727 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TIMP4Q99727 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.21■□□□□ 0.99
TIMP4Q99727 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.21■□□□□ 0.99
TIMP4Q99727 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.21■□□□□ 0.99
TIMP4Q99727 MIR4281-201ENST00000580852 62 ntBASIC21.21■□□□□ 0.99
TIMP4Q99727 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TIMP4Q99727 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.21■□□□□ 0.99
TIMP4Q99727 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
TIMP4Q99727 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TIMP4Q99727 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.21■□□□□ 0.99
TIMP4Q99727 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.2■□□□□ 0.99
TIMP4Q99727 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.2■□□□□ 0.98
TIMP4Q99727 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.2■□□□□ 0.98
TIMP4Q99727 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TIMP4Q99727 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
TIMP4Q99727 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TIMP4Q99727 AP003733.4-201ENST00000623785 1697 ntBASIC21.2■□□□□ 0.98
TIMP4Q99727 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TIMP4Q99727 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
TIMP4Q99727 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TIMP4Q99727 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TIMP4Q99727 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TIMP4Q99727 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.2■□□□□ 0.98
TIMP4Q99727 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.19■□□□□ 0.98
TIMP4Q99727 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TIMP4Q99727 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
TIMP4Q99727 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.19■□□□□ 0.98
TIMP4Q99727 AC021242.3-201ENST00000607598 1377 ntBASIC21.19■□□□□ 0.98
TIMP4Q99727 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
TIMP4Q99727 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
TIMP4Q99727 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TIMP4Q99727 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TIMP4Q99727 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TIMP4Q99727 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TIMP4Q99727 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TIMP4Q99727 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
TIMP4Q99727 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TIMP4Q99727 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
TIMP4Q99727 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
TIMP4Q99727 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.18■□□□□ 0.98
TIMP4Q99727 AL356441.2-201ENST00000443009 864 ntBASIC21.18■□□□□ 0.98
TIMP4Q99727 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.18■□□□□ 0.98
TIMP4Q99727 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
TIMP4Q99727 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TIMP4Q99727 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TIMP4Q99727 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
TIMP4Q99727 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TIMP4Q99727 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
TIMP4Q99727 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.17■□□□□ 0.98
TIMP4Q99727 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
TIMP4Q99727 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TIMP4Q99727 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
TIMP4Q99727 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TIMP4Q99727 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.17■□□□□ 0.98
TIMP4Q99727 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TIMP4Q99727 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.17■□□□□ 0.98
TIMP4Q99727 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
TIMP4Q99727 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.16■□□□□ 0.98
TIMP4Q99727 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.16■□□□□ 0.98
TIMP4Q99727 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TIMP4Q99727 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TIMP4Q99727 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TIMP4Q99727 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TIMP4Q99727 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TIMP4Q99727 AC133561.1-201ENST00000568600 2415 ntBASIC21.15■□□□□ 0.98
TIMP4Q99727 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TIMP4Q99727 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.15■□□□□ 0.98
TIMP4Q99727 AC131212.1-201ENST00000613771 668 ntBASIC21.15■□□□□ 0.98
TIMP4Q99727 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
TIMP4Q99727 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.15■□□□□ 0.98
TIMP4Q99727 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TIMP4Q99727 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TIMP4Q99727 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
TIMP4Q99727 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.14■□□□□ 0.97
TIMP4Q99727 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
TIMP4Q99727 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
TIMP4Q99727 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.14■□□□□ 0.97
TIMP4Q99727 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TIMP4Q99727 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TIMP4Q99727 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TIMP4Q99727 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.13■□□□□ 0.97
TIMP4Q99727 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TIMP4Q99727 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.13■□□□□ 0.97
TIMP4Q99727 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TIMP4Q99727 LINC00543-201ENST00000567234 1845 ntBASIC21.13■□□□□ 0.97
TIMP4Q99727 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TIMP4Q99727 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
TIMP4Q99727 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TIMP4Q99727 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.12■□□□□ 0.97
TIMP4Q99727 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TIMP4Q99727 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.12■□□□□ 0.97
TIMP4Q99727 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms