Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SKA3Q8IX90 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
SKA3Q8IX90 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SKA3Q8IX90 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.38■□□□□ 0.85
SKA3Q8IX90 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SKA3Q8IX90 AL031848.2-201ENST00000607670 837 ntBASIC20.37■□□□□ 0.85
SKA3Q8IX90 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.37■□□□□ 0.85
SKA3Q8IX90 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SKA3Q8IX90 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.37■□□□□ 0.85
SKA3Q8IX90 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
SKA3Q8IX90 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.37■□□□□ 0.85
SKA3Q8IX90 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC20.37■□□□□ 0.85
SKA3Q8IX90 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SKA3Q8IX90 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.36■□□□□ 0.85
SKA3Q8IX90 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SKA3Q8IX90 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SKA3Q8IX90 MIR4281-201ENST00000580852 62 ntBASIC20.36■□□□□ 0.85
SKA3Q8IX90 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SKA3Q8IX90 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.35■□□□□ 0.85
SKA3Q8IX90 LINC01124-201ENST00000409786 2117 ntBASIC20.35■□□□□ 0.85
SKA3Q8IX90 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SKA3Q8IX90 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SKA3Q8IX90 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SKA3Q8IX90 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SKA3Q8IX90 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SKA3Q8IX90 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.34■□□□□ 0.85
SKA3Q8IX90 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SKA3Q8IX90 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.34■□□□□ 0.85
SKA3Q8IX90 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.34■□□□□ 0.85
SKA3Q8IX90 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.34■□□□□ 0.85
SKA3Q8IX90 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.34■□□□□ 0.85
SKA3Q8IX90 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SKA3Q8IX90 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.34■□□□□ 0.85
SKA3Q8IX90 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.34■□□□□ 0.85
SKA3Q8IX90 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SKA3Q8IX90 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.33■□□□□ 0.85
SKA3Q8IX90 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SKA3Q8IX90 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SKA3Q8IX90 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SKA3Q8IX90 LINC00543-201ENST00000567234 1845 ntBASIC20.33■□□□□ 0.85
SKA3Q8IX90 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.33■□□□□ 0.85
SKA3Q8IX90 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
SKA3Q8IX90 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SKA3Q8IX90 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.33■□□□□ 0.84
SKA3Q8IX90 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.33■□□□□ 0.84
SKA3Q8IX90 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SKA3Q8IX90 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.33■□□□□ 0.84
SKA3Q8IX90 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SKA3Q8IX90 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SKA3Q8IX90 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
SKA3Q8IX90 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
SKA3Q8IX90 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
SKA3Q8IX90 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
SKA3Q8IX90 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SKA3Q8IX90 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SKA3Q8IX90 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.31■□□□□ 0.84
SKA3Q8IX90 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
SKA3Q8IX90 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SKA3Q8IX90 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SKA3Q8IX90 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SKA3Q8IX90 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.31■□□□□ 0.84
SKA3Q8IX90 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SKA3Q8IX90 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SKA3Q8IX90 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SKA3Q8IX90 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SKA3Q8IX90 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SKA3Q8IX90 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SKA3Q8IX90 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SKA3Q8IX90 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.3■□□□□ 0.84
SKA3Q8IX90 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.3■□□□□ 0.84
SKA3Q8IX90 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SKA3Q8IX90 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.3■□□□□ 0.84
SKA3Q8IX90 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.3■□□□□ 0.84
SKA3Q8IX90 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.3■□□□□ 0.84
SKA3Q8IX90 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SKA3Q8IX90 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SKA3Q8IX90 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SKA3Q8IX90 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SKA3Q8IX90 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.29■□□□□ 0.84
SKA3Q8IX90 AF131216.4-201ENST00000638924 1588 ntBASIC20.29■□□□□ 0.84
SKA3Q8IX90 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SKA3Q8IX90 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SKA3Q8IX90 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.28■□□□□ 0.84
SKA3Q8IX90 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SKA3Q8IX90 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
SKA3Q8IX90 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.28■□□□□ 0.84
SKA3Q8IX90 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SKA3Q8IX90 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.28■□□□□ 0.84
SKA3Q8IX90 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SKA3Q8IX90 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SKA3Q8IX90 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.84
SKA3Q8IX90 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SKA3Q8IX90 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
SKA3Q8IX90 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
SKA3Q8IX90 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SKA3Q8IX90 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
SKA3Q8IX90 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.26■□□□□ 0.83
SKA3Q8IX90 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.26■□□□□ 0.83
SKA3Q8IX90 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SKA3Q8IX90 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms