Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
SCUBE3Q8IX30 BX664725.1-201ENST00000438252 379 ntBASIC24.33■■□□□ 1.49
SCUBE3Q8IX30 AC239859.2-201ENST00000444165 318 ntBASIC24.33■■□□□ 1.49
SCUBE3Q8IX30 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
SCUBE3Q8IX30 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC24.33■■□□□ 1.48
SCUBE3Q8IX30 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
SCUBE3Q8IX30 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.48
SCUBE3Q8IX30 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
SCUBE3Q8IX30 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC24.32■■□□□ 1.48
SCUBE3Q8IX30 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
SCUBE3Q8IX30 LBH-205ENST00000407930 756 ntTSL 2 BASIC24.32■■□□□ 1.48
SCUBE3Q8IX30 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC24.32■■□□□ 1.48
SCUBE3Q8IX30 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC24.32■■□□□ 1.48
SCUBE3Q8IX30 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
SCUBE3Q8IX30 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
SCUBE3Q8IX30 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.32■■□□□ 1.48
SCUBE3Q8IX30 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SCUBE3Q8IX30 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SCUBE3Q8IX30 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC24.31■■□□□ 1.48
SCUBE3Q8IX30 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC24.31■■□□□ 1.48
SCUBE3Q8IX30 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SCUBE3Q8IX30 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC24.31■■□□□ 1.48
SCUBE3Q8IX30 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
SCUBE3Q8IX30 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
SCUBE3Q8IX30 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC24.31■■□□□ 1.48
SCUBE3Q8IX30 TRIR-205ENST00000592273 783 ntTSL 3 BASIC24.31■■□□□ 1.48
SCUBE3Q8IX30 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
SCUBE3Q8IX30 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
SCUBE3Q8IX30 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
SCUBE3Q8IX30 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
SCUBE3Q8IX30 AC021242.3-201ENST00000607598 1377 ntBASIC24.3■■□□□ 1.48
SCUBE3Q8IX30 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
SCUBE3Q8IX30 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
SCUBE3Q8IX30 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
SCUBE3Q8IX30 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
SCUBE3Q8IX30 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC24.3■■□□□ 1.48
SCUBE3Q8IX30 Z92544.1-202ENST00000571933 1220 ntBASIC24.3■■□□□ 1.48
SCUBE3Q8IX30 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
SCUBE3Q8IX30 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
SCUBE3Q8IX30 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
SCUBE3Q8IX30 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
SCUBE3Q8IX30 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
SCUBE3Q8IX30 LINC00543-201ENST00000567234 1845 ntBASIC24.29■■□□□ 1.48
SCUBE3Q8IX30 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
SCUBE3Q8IX30 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC24.29■■□□□ 1.48
SCUBE3Q8IX30 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC24.29■■□□□ 1.48
SCUBE3Q8IX30 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
SCUBE3Q8IX30 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
SCUBE3Q8IX30 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC24.28■■□□□ 1.48
SCUBE3Q8IX30 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
SCUBE3Q8IX30 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
SCUBE3Q8IX30 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
SCUBE3Q8IX30 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC24.28■■□□□ 1.48
SCUBE3Q8IX30 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
SCUBE3Q8IX30 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
SCUBE3Q8IX30 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
SCUBE3Q8IX30 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
SCUBE3Q8IX30 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
SCUBE3Q8IX30 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
SCUBE3Q8IX30 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SCUBE3Q8IX30 AC131274.2-201ENST00000580697 1507 ntBASIC24.27■■□□□ 1.48
SCUBE3Q8IX30 SENP5-202ENST00000419026 973 ntTSL 3 BASIC24.27■■□□□ 1.48
SCUBE3Q8IX30 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC24.27■■□□□ 1.48
SCUBE3Q8IX30 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC24.27■■□□□ 1.48
SCUBE3Q8IX30 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC24.27■■□□□ 1.48
SCUBE3Q8IX30 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
SCUBE3Q8IX30 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC24.27■■□□□ 1.48
SCUBE3Q8IX30 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC24.27■■□□□ 1.48
SCUBE3Q8IX30 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
SCUBE3Q8IX30 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
SCUBE3Q8IX30 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
SCUBE3Q8IX30 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC24.26■■□□□ 1.47
SCUBE3Q8IX30 TK2-202ENST00000417693 1046 ntTSL 2 BASIC24.26■■□□□ 1.47
SCUBE3Q8IX30 KRT125P-201ENST00000546827 989 ntBASIC24.26■■□□□ 1.47
SCUBE3Q8IX30 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
SCUBE3Q8IX30 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SCUBE3Q8IX30 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC24.25■■□□□ 1.47
SCUBE3Q8IX30 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
SCUBE3Q8IX30 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
SCUBE3Q8IX30 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC24.25■■□□□ 1.47
SCUBE3Q8IX30 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SCUBE3Q8IX30 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
SCUBE3Q8IX30 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SCUBE3Q8IX30 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC24.24■■□□□ 1.47
SCUBE3Q8IX30 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC24.24■■□□□ 1.47
SCUBE3Q8IX30 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SCUBE3Q8IX30 OR2A1-AS1-204ENST00000470435 602 ntBASIC24.24■■□□□ 1.47
SCUBE3Q8IX30 MIR4787-201ENST00000607364 84 ntBASIC24.24■■□□□ 1.47
SCUBE3Q8IX30 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SCUBE3Q8IX30 AL022069.1-201ENST00000568025 1636 ntBASIC24.24■■□□□ 1.47
SCUBE3Q8IX30 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
SCUBE3Q8IX30 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
SCUBE3Q8IX30 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SCUBE3Q8IX30 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SCUBE3Q8IX30 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC24.23■■□□□ 1.47
SCUBE3Q8IX30 MTURN-203ENST00000409688 843 ntTSL 2 BASIC24.23■■□□□ 1.47
SCUBE3Q8IX30 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
SCUBE3Q8IX30 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SCUBE3Q8IX30 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC24.23■■□□□ 1.47
SCUBE3Q8IX30 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms