Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF404Q494X3 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF404Q494X3 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF404Q494X3 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF404Q494X3 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.83■□□□□ 0.93
ZNF404Q494X3 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF404Q494X3 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC20.83■□□□□ 0.93
ZNF404Q494X3 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
ZNF404Q494X3 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
ZNF404Q494X3 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
ZNF404Q494X3 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
ZNF404Q494X3 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
ZNF404Q494X3 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.82■□□□□ 0.92
ZNF404Q494X3 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF404Q494X3 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF404Q494X3 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF404Q494X3 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF404Q494X3 HES4-202ENST00000428771 1040 ntTSL 2 BASIC20.82■□□□□ 0.92
ZNF404Q494X3 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.82■□□□□ 0.92
ZNF404Q494X3 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF404Q494X3 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF404Q494X3 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF404Q494X3 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.81■□□□□ 0.92
ZNF404Q494X3 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ZNF404Q494X3 AL359258.2-201ENST00000564063 1566 ntBASIC20.81■□□□□ 0.92
ZNF404Q494X3 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.81■□□□□ 0.92
ZNF404Q494X3 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
ZNF404Q494X3 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.81■□□□□ 0.92
ZNF404Q494X3 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
ZNF404Q494X3 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF404Q494X3 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.8■□□□□ 0.92
ZNF404Q494X3 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF404Q494X3 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF404Q494X3 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF404Q494X3 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF404Q494X3 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.8■□□□□ 0.92
ZNF404Q494X3 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.8■□□□□ 0.92
ZNF404Q494X3 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.8■□□□□ 0.92
ZNF404Q494X3 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF404Q494X3 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF404Q494X3 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF404Q494X3 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF404Q494X3 RNF126P1-201ENST00000567452 1320 ntBASIC20.79■□□□□ 0.92
ZNF404Q494X3 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF404Q494X3 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF404Q494X3 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF404Q494X3 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF404Q494X3 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF404Q494X3 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.79■□□□□ 0.92
ZNF404Q494X3 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF404Q494X3 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF404Q494X3 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF404Q494X3 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF404Q494X3 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.78■□□□□ 0.92
ZNF404Q494X3 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF404Q494X3 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.78■□□□□ 0.92
ZNF404Q494X3 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF404Q494X3 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF404Q494X3 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.78■□□□□ 0.92
ZNF404Q494X3 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF404Q494X3 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF404Q494X3 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
ZNF404Q494X3 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.77■□□□□ 0.92
ZNF404Q494X3 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.77■□□□□ 0.92
ZNF404Q494X3 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
ZNF404Q494X3 AC092296.2-201ENST00000589470 999 ntBASIC20.77■□□□□ 0.92
ZNF404Q494X3 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.77■□□□□ 0.91
ZNF404Q494X3 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
ZNF404Q494X3 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF404Q494X3 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF404Q494X3 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
ZNF404Q494X3 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF404Q494X3 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF404Q494X3 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
ZNF404Q494X3 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.75■□□□□ 0.91
ZNF404Q494X3 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF404Q494X3 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
ZNF404Q494X3 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF404Q494X3 RARRES2P2-201ENST00000394842 485 ntBASIC20.75■□□□□ 0.91
ZNF404Q494X3 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF404Q494X3 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF404Q494X3 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF404Q494X3 AC137767.1-201ENST00000602918 1920 ntBASIC20.74■□□□□ 0.91
ZNF404Q494X3 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ZNF404Q494X3 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
ZNF404Q494X3 AL157400.5-201ENST00000507624 621 ntBASIC20.74■□□□□ 0.91
ZNF404Q494X3 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ZNF404Q494X3 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
ZNF404Q494X3 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
ZNF404Q494X3 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
ZNF404Q494X3 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.74■□□□□ 0.91
ZNF404Q494X3 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ZNF404Q494X3 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC20.73■□□□□ 0.91
ZNF404Q494X3 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.73■□□□□ 0.91
ZNF404Q494X3 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF404Q494X3 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF404Q494X3 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
ZNF404Q494X3 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF404Q494X3 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF404Q494X3 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 134 ms