Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
HMGB3O15347 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB3O15347 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB3O15347 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB3O15347 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB3O15347 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB3O15347 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
HMGB3O15347 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGB3O15347 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGB3O15347 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGB3O15347 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGB3O15347 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HMGB3O15347 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGB3O15347 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGB3O15347 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
HMGB3O15347 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGB3O15347 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB3O15347 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB3O15347 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB3O15347 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB3O15347 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB3O15347 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC18.53■□□□□ 0.56
HMGB3O15347 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB3O15347 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB3O15347 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.53■□□□□ 0.56
HMGB3O15347 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB3O15347 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
HMGB3O15347 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGB3O15347 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGB3O15347 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC18.52■□□□□ 0.56
HMGB3O15347 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGB3O15347 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC18.52■□□□□ 0.56
HMGB3O15347 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.52■□□□□ 0.56
HMGB3O15347 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGB3O15347 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
HMGB3O15347 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.55
HMGB3O15347 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
HMGB3O15347 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB3O15347 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB3O15347 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB3O15347 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
HMGB3O15347 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB3O15347 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB3O15347 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB3O15347 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC18.51■□□□□ 0.55
HMGB3O15347 MIR3665-201ENST00000578708 105 ntBASIC18.51■□□□□ 0.55
HMGB3O15347 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB3O15347 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB3O15347 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB3O15347 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB3O15347 AC141586.4-201ENST00000624558 1573 ntBASIC18.51■□□□□ 0.55
HMGB3O15347 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC18.51■□□□□ 0.55
HMGB3O15347 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB3O15347 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB3O15347 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC18.5■□□□□ 0.55
HMGB3O15347 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
HMGB3O15347 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
HMGB3O15347 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC18.5■□□□□ 0.55
HMGB3O15347 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB3O15347 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB3O15347 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB3O15347 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB3O15347 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGB3O15347 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB3O15347 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB3O15347 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB3O15347 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB3O15347 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
HMGB3O15347 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
HMGB3O15347 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB3O15347 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB3O15347 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB3O15347 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
HMGB3O15347 AL359504.2-201ENST00000605506 1601 ntBASIC18.49■□□□□ 0.55
HMGB3O15347 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC18.48■□□□□ 0.55
HMGB3O15347 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB3O15347 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB3O15347 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
HMGB3O15347 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB3O15347 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC18.48■□□□□ 0.55
HMGB3O15347 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB3O15347 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB3O15347 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB3O15347 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB3O15347 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
HMGB3O15347 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB3O15347 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
HMGB3O15347 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB3O15347 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB3O15347 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.47■□□□□ 0.55
HMGB3O15347 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB3O15347 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB3O15347 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB3O15347 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB3O15347 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB3O15347 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB3O15347 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
HMGB3O15347 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
HMGB3O15347 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
HMGB3O15347 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms