Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.12■□□□□ 0.97
COL6A6A6NMZ7 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.12■□□□□ 0.97
COL6A6A6NMZ7 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.12■□□□□ 0.97
COL6A6A6NMZ7 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL6A6A6NMZ7 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
COL6A6A6NMZ7 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL6A6A6NMZ7 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
COL6A6A6NMZ7 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL6A6A6NMZ7 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL6A6A6NMZ7 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
COL6A6A6NMZ7 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.12■□□□□ 0.97
COL6A6A6NMZ7 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL6A6A6NMZ7 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.12■□□□□ 0.97
COL6A6A6NMZ7 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.12■□□□□ 0.97
COL6A6A6NMZ7 DRD5P2-201ENST00000421395 2012 ntBASIC21.12■□□□□ 0.97
COL6A6A6NMZ7 BX842568.3-201ENST00000418104 571 ntBASIC21.11■□□□□ 0.97
COL6A6A6NMZ7 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL6A6A6NMZ7 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
COL6A6A6NMZ7 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL6A6A6NMZ7 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.1■□□□□ 0.97
COL6A6A6NMZ7 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.1■□□□□ 0.97
COL6A6A6NMZ7 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
COL6A6A6NMZ7 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL6A6A6NMZ7 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.09■□□□□ 0.97
COL6A6A6NMZ7 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
COL6A6A6NMZ7 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
COL6A6A6NMZ7 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.09■□□□□ 0.97
COL6A6A6NMZ7 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.09■□□□□ 0.97
COL6A6A6NMZ7 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL6A6A6NMZ7 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL6A6A6NMZ7 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.09■□□□□ 0.97
COL6A6A6NMZ7 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.09■□□□□ 0.97
COL6A6A6NMZ7 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.09■□□□□ 0.97
COL6A6A6NMZ7 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL6A6A6NMZ7 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL6A6A6NMZ7 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL6A6A6NMZ7 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
COL6A6A6NMZ7 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.08■□□□□ 0.97
COL6A6A6NMZ7 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL6A6A6NMZ7 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL6A6A6NMZ7 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.08■□□□□ 0.96
COL6A6A6NMZ7 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.08■□□□□ 0.96
COL6A6A6NMZ7 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A6A6NMZ7 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A6A6NMZ7 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.07■□□□□ 0.96
COL6A6A6NMZ7 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A6A6NMZ7 RAP2CP1-201ENST00000605103 478 ntBASIC21.07■□□□□ 0.96
COL6A6A6NMZ7 AC099791.2-201ENST00000605725 427 ntBASIC21.07■□□□□ 0.96
COL6A6A6NMZ7 AL358852.1-201ENST00000623174 1268 ntBASIC21.07■□□□□ 0.96
COL6A6A6NMZ7 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.07■□□□□ 0.96
COL6A6A6NMZ7 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A6A6NMZ7 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.07■□□□□ 0.96
COL6A6A6NMZ7 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.07■□□□□ 0.96
COL6A6A6NMZ7 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A6A6NMZ7 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.07■□□□□ 0.96
COL6A6A6NMZ7 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
COL6A6A6NMZ7 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A6A6NMZ7 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
COL6A6A6NMZ7 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.06■□□□□ 0.96
COL6A6A6NMZ7 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
COL6A6A6NMZ7 AC136469.2-201ENST00000623944 1028 ntBASIC21.06■□□□□ 0.96
COL6A6A6NMZ7 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL6A6A6NMZ7 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL6A6A6NMZ7 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL6A6A6NMZ7 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.06■□□□□ 0.96
COL6A6A6NMZ7 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.06■□□□□ 0.96
COL6A6A6NMZ7 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL6A6A6NMZ7 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL6A6A6NMZ7 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL6A6A6NMZ7 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.04■□□□□ 0.96
COL6A6A6NMZ7 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL6A6A6NMZ7 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL6A6A6NMZ7 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL6A6A6NMZ7 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.04■□□□□ 0.96
COL6A6A6NMZ7 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
COL6A6A6NMZ7 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A6A6NMZ7 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.03■□□□□ 0.96
COL6A6A6NMZ7 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.03■□□□□ 0.96
COL6A6A6NMZ7 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.03■□□□□ 0.96
COL6A6A6NMZ7 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A6A6NMZ7 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.03■□□□□ 0.96
COL6A6A6NMZ7 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A6A6NMZ7 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A6A6NMZ7 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
COL6A6A6NMZ7 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
COL6A6A6NMZ7 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL6A6A6NMZ7 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL6A6A6NMZ7 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL6A6A6NMZ7 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL6A6A6NMZ7 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
COL6A6A6NMZ7 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
COL6A6A6NMZ7 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
COL6A6A6NMZ7 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL6A6A6NMZ7 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL6A6A6NMZ7 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL6A6A6NMZ7 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.01■□□□□ 0.95
COL6A6A6NMZ7 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL6A6A6NMZ7 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
COL6A6A6NMZ7 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.01■□□□□ 0.95
COL6A6A6NMZ7 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms