Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
DDX28Q9NUL7 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
DDX28Q9NUL7 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
DDX28Q9NUL7 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.99■□□□□ 0.95
DDX28Q9NUL7 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
DDX28Q9NUL7 CEP120-209ENST00000515110 606 ntTSL 3 BASIC20.99■□□□□ 0.95
DDX28Q9NUL7 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.99■□□□□ 0.95
DDX28Q9NUL7 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.99■□□□□ 0.95
DDX28Q9NUL7 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
DDX28Q9NUL7 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
DDX28Q9NUL7 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
DDX28Q9NUL7 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
DDX28Q9NUL7 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
DDX28Q9NUL7 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
DDX28Q9NUL7 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
DDX28Q9NUL7 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC20.98■□□□□ 0.95
DDX28Q9NUL7 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
DDX28Q9NUL7 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
DDX28Q9NUL7 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
DDX28Q9NUL7 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
DDX28Q9NUL7 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
DDX28Q9NUL7 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
DDX28Q9NUL7 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
DDX28Q9NUL7 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
DDX28Q9NUL7 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
DDX28Q9NUL7 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
DDX28Q9NUL7 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
DDX28Q9NUL7 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
DDX28Q9NUL7 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
DDX28Q9NUL7 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
DDX28Q9NUL7 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
DDX28Q9NUL7 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX28Q9NUL7 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.96■□□□□ 0.95
DDX28Q9NUL7 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX28Q9NUL7 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX28Q9NUL7 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
DDX28Q9NUL7 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
DDX28Q9NUL7 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX28Q9NUL7 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX28Q9NUL7 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
DDX28Q9NUL7 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
DDX28Q9NUL7 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.95■□□□□ 0.95
DDX28Q9NUL7 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX28Q9NUL7 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
DDX28Q9NUL7 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.95■□□□□ 0.94
DDX28Q9NUL7 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC20.95■□□□□ 0.94
DDX28Q9NUL7 HES4-202ENST00000428771 1040 ntTSL 2 BASIC20.95■□□□□ 0.94
DDX28Q9NUL7 RP9P-202ENST00000450133 1212 ntBASIC20.95■□□□□ 0.94
DDX28Q9NUL7 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX28Q9NUL7 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
DDX28Q9NUL7 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
DDX28Q9NUL7 AC022211.4-201ENST00000625094 2161 ntBASIC20.95■□□□□ 0.94
DDX28Q9NUL7 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
DDX28Q9NUL7 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.94■□□□□ 0.94
DDX28Q9NUL7 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
DDX28Q9NUL7 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.94■□□□□ 0.94
DDX28Q9NUL7 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.94■□□□□ 0.94
DDX28Q9NUL7 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC20.94■□□□□ 0.94
DDX28Q9NUL7 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
DDX28Q9NUL7 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
DDX28Q9NUL7 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20.93■□□□□ 0.94
DDX28Q9NUL7 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
DDX28Q9NUL7 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
DDX28Q9NUL7 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
DDX28Q9NUL7 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
DDX28Q9NUL7 AC097639.1-201ENST00000565519 1891 ntBASIC20.93■□□□□ 0.94
DDX28Q9NUL7 AC007029.1-201ENST00000604183 313 ntBASIC20.93■□□□□ 0.94
DDX28Q9NUL7 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
DDX28Q9NUL7 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
DDX28Q9NUL7 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
DDX28Q9NUL7 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.93■□□□□ 0.94
DDX28Q9NUL7 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
DDX28Q9NUL7 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
DDX28Q9NUL7 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
DDX28Q9NUL7 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC20.92■□□□□ 0.94
DDX28Q9NUL7 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC20.92■□□□□ 0.94
DDX28Q9NUL7 GPX1-201ENST00000419349 1106 ntBASIC20.92■□□□□ 0.94
DDX28Q9NUL7 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.92■□□□□ 0.94
DDX28Q9NUL7 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.92■□□□□ 0.94
DDX28Q9NUL7 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
DDX28Q9NUL7 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
DDX28Q9NUL7 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
DDX28Q9NUL7 RARRES2P2-201ENST00000394842 485 ntBASIC20.91■□□□□ 0.94
DDX28Q9NUL7 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
DDX28Q9NUL7 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
DDX28Q9NUL7 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.91■□□□□ 0.94
DDX28Q9NUL7 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
DDX28Q9NUL7 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
DDX28Q9NUL7 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
DDX28Q9NUL7 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
DDX28Q9NUL7 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.9■□□□□ 0.94
DDX28Q9NUL7 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.9■□□□□ 0.94
DDX28Q9NUL7 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
DDX28Q9NUL7 AC138932.3-201ENST00000567634 1902 ntBASIC20.9■□□□□ 0.94
DDX28Q9NUL7 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
DDX28Q9NUL7 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
DDX28Q9NUL7 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
DDX28Q9NUL7 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
DDX28Q9NUL7 AC093536.1-201ENST00000569153 554 ntBASIC20.9■□□□□ 0.94
DDX28Q9NUL7 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms