Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC23.88■■□□□ 1.41
NEK3P51956 EED-207ENST00000528180 1745 ntTSL 5 BASIC23.87■■□□□ 1.41
NEK3P51956 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
NEK3P51956 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC23.87■■□□□ 1.41
NEK3P51956 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC23.87■■□□□ 1.41
NEK3P51956 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC23.87■■□□□ 1.41
NEK3P51956 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
NEK3P51956 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.87■■□□□ 1.41
NEK3P51956 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NEK3P51956 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
NEK3P51956 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
NEK3P51956 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NEK3P51956 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NEK3P51956 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC23.85■■□□□ 1.41
NEK3P51956 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC23.85■■□□□ 1.41
NEK3P51956 KRT18P24-201ENST00000344739 1156 ntBASIC23.85■■□□□ 1.41
NEK3P51956 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NEK3P51956 LINC01124-201ENST00000409786 2117 ntBASIC23.85■■□□□ 1.41
NEK3P51956 THA1P-201ENST00000590384 1145 ntBASIC23.85■■□□□ 1.41
NEK3P51956 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
NEK3P51956 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
NEK3P51956 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
NEK3P51956 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
NEK3P51956 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
NEK3P51956 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC23.84■■□□□ 1.41
NEK3P51956 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NEK3P51956 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
NEK3P51956 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
NEK3P51956 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
NEK3P51956 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC23.84■■□□□ 1.41
NEK3P51956 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC23.84■■□□□ 1.41
NEK3P51956 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NEK3P51956 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NEK3P51956 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC23.83■■□□□ 1.41
NEK3P51956 AP003733.4-201ENST00000623785 1697 ntBASIC23.83■■□□□ 1.41
NEK3P51956 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
NEK3P51956 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
NEK3P51956 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
NEK3P51956 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
NEK3P51956 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
NEK3P51956 HES6-204ENST00000409182 863 ntTSL 2 BASIC23.83■■□□□ 1.41
NEK3P51956 RNF146-205ENST00000477776 762 ntTSL 3 BASIC23.83■■□□□ 1.41
NEK3P51956 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
NEK3P51956 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
NEK3P51956 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
NEK3P51956 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NEK3P51956 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NEK3P51956 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NEK3P51956 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NEK3P51956 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NEK3P51956 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC23.82■■□□□ 1.4
NEK3P51956 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC23.82■■□□□ 1.4
NEK3P51956 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
NEK3P51956 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC23.82■■□□□ 1.4
NEK3P51956 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC23.82■■□□□ 1.4
NEK3P51956 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NEK3P51956 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NEK3P51956 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC23.82■■□□□ 1.4
NEK3P51956 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC23.82■■□□□ 1.4
NEK3P51956 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NEK3P51956 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NEK3P51956 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC23.82■■□□□ 1.4
NEK3P51956 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NEK3P51956 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NEK3P51956 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NEK3P51956 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NEK3P51956 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NEK3P51956 AC120024.1-201ENST00000562672 995 ntBASIC23.81■■□□□ 1.4
NEK3P51956 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
NEK3P51956 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NEK3P51956 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NEK3P51956 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
NEK3P51956 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NEK3P51956 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC23.8■■□□□ 1.4
NEK3P51956 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
NEK3P51956 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
NEK3P51956 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
NEK3P51956 OR2A1-AS1-204ENST00000470435 602 ntBASIC23.79■■□□□ 1.4
NEK3P51956 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
NEK3P51956 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NEK3P51956 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NEK3P51956 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NEK3P51956 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NEK3P51956 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NEK3P51956 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
NEK3P51956 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC23.78■■□□□ 1.4
NEK3P51956 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.78■■□□□ 1.4
NEK3P51956 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NEK3P51956 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NEK3P51956 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC23.78■■□□□ 1.4
NEK3P51956 SLC6A10P-202ENST00000431994 2058 ntBASIC23.78■■□□□ 1.4
NEK3P51956 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NEK3P51956 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NEK3P51956 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC23.78■■□□□ 1.4
NEK3P51956 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC23.77■■□□□ 1.4
NEK3P51956 Z92544.1-202ENST00000571933 1220 ntBASIC23.77■■□□□ 1.4
NEK3P51956 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NEK3P51956 AC097639.1-201ENST00000565519 1891 ntBASIC23.77■■□□□ 1.4
NEK3P51956 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NEK3P51956 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms