Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC25.69■■□□□ 1.7
CLCN3P51790 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC25.69■■□□□ 1.7
CLCN3P51790 MIR3621-201ENST00000580529 85 ntBASIC25.69■■□□□ 1.7
CLCN3P51790 LSM7-203ENST00000585409 512 ntTSL 2 BASIC25.69■■□□□ 1.7
CLCN3P51790 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC25.69■■□□□ 1.7
CLCN3P51790 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC25.69■■□□□ 1.7
CLCN3P51790 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC25.69■■□□□ 1.7
CLCN3P51790 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CLCN3P51790 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
CLCN3P51790 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CLCN3P51790 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CLCN3P51790 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CLCN3P51790 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CLCN3P51790 CLTA-206ENST00000466396 695 ntTSL 2 BASIC25.68■■□□□ 1.7
CLCN3P51790 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CLCN3P51790 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC25.68■■□□□ 1.7
CLCN3P51790 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CLCN3P51790 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CLCN3P51790 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC25.67■■□□□ 1.7
CLCN3P51790 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CLCN3P51790 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CLCN3P51790 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
CLCN3P51790 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CLCN3P51790 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC25.66■■□□□ 1.7
CLCN3P51790 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC25.66■■□□□ 1.7
CLCN3P51790 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CLCN3P51790 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC25.66■■□□□ 1.7
CLCN3P51790 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CLCN3P51790 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
CLCN3P51790 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC25.66■■□□□ 1.7
CLCN3P51790 MIR6089-201ENST00000616698 64 ntBASIC25.66■■□□□ 1.7
CLCN3P51790 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CLCN3P51790 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CLCN3P51790 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
CLCN3P51790 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
CLCN3P51790 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CLCN3P51790 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC25.65■■□□□ 1.7
CLCN3P51790 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CLCN3P51790 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC25.65■■□□□ 1.7
CLCN3P51790 AK3-203ENST00000447596 705 ntTSL 2 BASIC25.65■■□□□ 1.7
CLCN3P51790 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC25.65■■□□□ 1.7
CLCN3P51790 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
CLCN3P51790 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CLCN3P51790 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CLCN3P51790 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.7
CLCN3P51790 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC25.64■■□□□ 1.7
CLCN3P51790 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC25.64■■□□□ 1.7
CLCN3P51790 AL356740.2-201ENST00000601559 647 ntBASIC25.64■■□□□ 1.7
CLCN3P51790 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC25.64■■□□□ 1.7
CLCN3P51790 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
CLCN3P51790 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.64■■□□□ 1.69
CLCN3P51790 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CLCN3P51790 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CLCN3P51790 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC25.63■■□□□ 1.69
CLCN3P51790 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC25.63■■□□□ 1.69
CLCN3P51790 MIR6722-201ENST00000617286 78 ntBASIC25.63■■□□□ 1.69
CLCN3P51790 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CLCN3P51790 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC25.63■■□□□ 1.69
CLCN3P51790 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CLCN3P51790 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC25.62■■□□□ 1.69
CLCN3P51790 TFPT-201ENST00000391757 774 ntTSL 5 BASIC25.62■■□□□ 1.69
CLCN3P51790 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
CLCN3P51790 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC25.62■■□□□ 1.69
CLCN3P51790 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CLCN3P51790 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CLCN3P51790 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC25.61■■□□□ 1.69
CLCN3P51790 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC25.61■■□□□ 1.69
CLCN3P51790 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
CLCN3P51790 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CLCN3P51790 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC25.61■■□□□ 1.69
CLCN3P51790 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
CLCN3P51790 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC25.61■■□□□ 1.69
CLCN3P51790 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CLCN3P51790 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC25.61■■□□□ 1.69
CLCN3P51790 LSR-205ENST00000427250 1606 ntTSL 2 BASIC25.6■■□□□ 1.69
CLCN3P51790 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC25.6■■□□□ 1.69
CLCN3P51790 AL136116.3-201ENST00000402907 1138 ntBASIC25.6■■□□□ 1.69
CLCN3P51790 AC004448.1-201ENST00000458332 883 ntBASIC25.6■■□□□ 1.69
CLCN3P51790 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC25.6■■□□□ 1.69
CLCN3P51790 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC25.6■■□□□ 1.69
CLCN3P51790 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC25.6■■□□□ 1.69
CLCN3P51790 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC25.6■■□□□ 1.69
CLCN3P51790 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
CLCN3P51790 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC25.59■■□□□ 1.69
CLCN3P51790 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CLCN3P51790 QDPR-206ENST00000508623 601 ntTSL 3 BASIC25.59■■□□□ 1.69
CLCN3P51790 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
CLCN3P51790 MIR4466-201ENST00000606121 54 ntBASIC25.59■■□□□ 1.69
CLCN3P51790 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC25.59■■□□□ 1.69
CLCN3P51790 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
CLCN3P51790 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CLCN3P51790 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CLCN3P51790 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC25.58■■□□□ 1.69
CLCN3P51790 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CLCN3P51790 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC25.58■■□□□ 1.69
CLCN3P51790 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
CLCN3P51790 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC25.58■■□□□ 1.69
CLCN3P51790 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC25.58■■□□□ 1.69
CLCN3P51790 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC25.58■■□□□ 1.69
CLCN3P51790 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC25.58■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms