Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 RNPS1-206ENST00000562205 2223 ntTSL 215.56■□□□□ 0.084e-6■□□□□ 8.8
LIN28BQ6ZN17 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.054e-6■□□□□ 8.8
LIN28BQ6ZN17 TPR-202ENST00000451586 515 ntTSL 226.98■■□□□ 1.912e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.332e-6■□□□□ 8.8
LIN28BQ6ZN17 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC22.13■■□□□ 1.132e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-215ENST00000542822 936 ntTSL 521.79■■□□□ 1.082e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC21.21■□□□□ 0.992e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-212ENST00000542044 1544 ntTSL 521.19■□□□□ 0.982e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-226ENST00000640813 1283 ntTSL 521.09■□□□□ 0.972e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.92■□□□□ 0.942e-6■□□□□ 8.8
LIN28BQ6ZN17 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.86■□□□□ 0.932e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.3■□□□□ 0.522e-6■□□□□ 8.8
LIN28BQ6ZN17 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.482e-6■□□□□ 8.8
LIN28BQ6ZN17 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.03■□□□□ 0.482e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-207ENST00000536185 441 ntTSL 317.85■□□□□ 0.452e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-222ENST00000545621 1282 ntTSL 1 (best)17.85■□□□□ 0.452e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-225ENST00000546302 707 ntTSL 517.85■□□□□ 0.452e-6■□□□□ 8.8
LIN28BQ6ZN17 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC17.16■□□□□ 0.342e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.14■□□□□ 0.332e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-208ENST00000536813 507 ntTSL 317.08■□□□□ 0.322e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC16.71■□□□□ 0.272e-6■□□□□ 8.8
LIN28BQ6ZN17 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.152e-6■□□□□ 8.8
LIN28BQ6ZN17 SUPT4H1-205ENST00000581166 1401 ntTSL 215.87■□□□□ 0.132e-6■□□□□ 8.8
LIN28BQ6ZN17 LSM14A-205ENST00000586157 944 ntTSL 515.83■□□□□ 0.122e-6■□□□□ 8.8
LIN28BQ6ZN17 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.12e-6■□□□□ 8.8
LIN28BQ6ZN17 TPR-205ENST00000474852 2757 ntTSL 1 (best)15.41■□□□□ 0.062e-6■□□□□ 8.8
LIN28BQ6ZN17 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC15.2■□□□□ 0.022e-6■□□□□ 8.8
LIN28BQ6ZN17 CCT2-213ENST00000551899 572 ntTSL 414.7□□□□□ -0.062e-6■□□□□ 8.8
LIN28BQ6ZN17 AURKB-207ENST00000580998 746 ntTSL 314.59□□□□□ -0.072e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-224ENST00000546226 2112 ntTSL 214.41□□□□□ -0.12e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-218ENST00000543821 562 ntTSL 414.37□□□□□ -0.112e-6■□□□□ 8.8
LIN28BQ6ZN17 SRSF1-202ENST00000578430 689 ntTSL 214.33□□□□□ -0.122e-6■□□□□ 8.8
LIN28BQ6ZN17 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.192e-6■□□□□ 8.8
LIN28BQ6ZN17 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.22e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-202ENST00000392841 1411 ntTSL 1 (best) BASIC13.69□□□□□ -0.222e-6■□□□□ 8.8
LIN28BQ6ZN17 PCLAF-201ENST00000300035 2194 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.242e-6■□□□□ 8.8
LIN28BQ6ZN17 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.242e-6■□□□□ 8.8
LIN28BQ6ZN17 SUPT4H1-203ENST00000579289 318 ntTSL 313.32□□□□□ -0.282e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-205ENST00000535253 755 ntTSL 413.29□□□□□ -0.282e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-211ENST00000539986 1155 ntTSL 313.29□□□□□ -0.282e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-220ENST00000544360 695 ntTSL 313.29□□□□□ -0.282e-6■□□□□ 8.8
LIN28BQ6ZN17 AC087632.1-209ENST00000634259 825 ntTSL 513.26□□□□□ -0.292e-6■□□□□ 8.8
LIN28BQ6ZN17 GRIPAP1-201ENST00000376423 3031 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.322e-6■□□□□ 8.8
LIN28BQ6ZN17 AURKB-204ENST00000578549 939 ntTSL 1 (best) BASIC12.69□□□□□ -0.382e-6■□□□□ 8.8
LIN28BQ6ZN17 AURKB-213ENST00000584972 739 ntTSL 312.14□□□□□ -0.472e-6■□□□□ 8.8
LIN28BQ6ZN17 GRIPAP1-215ENST00000622599 2881 ntTSL 5 BASIC12.14□□□□□ -0.472e-6■□□□□ 8.8
LIN28BQ6ZN17 SUPT4H1-204ENST00000580947 574 ntAPPRIS P1 TSL 4 BASIC12.05□□□□□ -0.482e-6■□□□□ 8.8
LIN28BQ6ZN17 CCT2-207ENST00000549933 536 ntTSL 211.95□□□□□ -0.52e-6■□□□□ 8.8
LIN28BQ6ZN17 GRIPAP1-207ENST00000593475 2908 ntTSL 5 BASIC11.95□□□□□ -0.52e-6■□□□□ 8.8
LIN28BQ6ZN17 GRIPAP1-212ENST00000619149 2828 ntTSL 211.95□□□□□ -0.52e-6■□□□□ 8.8
LIN28BQ6ZN17 AURKB-203ENST00000577833 867 ntTSL 311.68□□□□□ -0.542e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-217ENST00000543543 1796 ntTSL 511.42□□□□□ -0.582e-6■□□□□ 8.8
LIN28BQ6ZN17 AURKB-205ENST00000578753 467 ntTSL 210.22□□□□□ -0.772e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-206ENST00000535793 832 ntTSL 510.01□□□□□ -0.812e-6■□□□□ 8.8
LIN28BQ6ZN17 LARS-204ENST00000504323 608 ntTSL 39.53□□□□□ -0.882e-6■□□□□ 8.8
LIN28BQ6ZN17 LSM14A-206ENST00000588582 3601 ntTSL 29.16□□□□□ -0.942e-6■□□□□ 8.8
LIN28BQ6ZN17 ZKSCAN8-204ENST00000606198 2057 ntTSL 1 (best)8.61□□□□□ -1.032e-6■□□□□ 8.8
LIN28BQ6ZN17 ZKSCAN8-202ENST00000457389 2071 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.052e-6■□□□□ 8.8
LIN28BQ6ZN17 AC087632.1-204ENST00000635160 692 ntTSL 48.44□□□□□ -1.062e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-213ENST00000542345 882 ntTSL 38.26□□□□□ -1.092e-6■□□□□ 8.8
LIN28BQ6ZN17 AC087632.1-208ENST00000635511 920 ntTSL 57.95□□□□□ -1.142e-6■□□□□ 8.8
LIN28BQ6ZN17 AC087632.1-211ENST00000560278 595 ntTSL 47.95□□□□□ -1.142e-6■□□□□ 8.8
LIN28BQ6ZN17 AC087632.1-210ENST00000635593 668 ntTSL 57.79□□□□□ -1.162e-6■□□□□ 8.8
LIN28BQ6ZN17 AC087632.1-213ENST00000634538 924 ntTSL 57.79□□□□□ -1.162e-6■□□□□ 8.8
LIN28BQ6ZN17 ZKSCAN8-203ENST00000536028 1052 ntTSL 27.4□□□□□ -1.222e-6■□□□□ 8.8
LIN28BQ6ZN17 SUPT4H1-207ENST00000581540 668 ntTSL 2 BASIC7.12□□□□□ -1.272e-6■□□□□ 8.8
LIN28BQ6ZN17 AC087632.1-205ENST00000635704 670 ntTSL 36.85□□□□□ -1.312e-6■□□□□ 8.8
LIN28BQ6ZN17 AC087632.1-203ENST00000634318 1033 ntTSL 56.61□□□□□ -1.352e-6■□□□□ 8.8
LIN28BQ6ZN17 RRM1-205ENST00000528442 783 ntTSL 36.26□□□□□ -1.412e-6■□□□□ 8.8
LIN28BQ6ZN17 NAA15-204ENST00000480277 852 ntTSL 36.16□□□□□ -1.422e-6■□□□□ 8.8
LIN28BQ6ZN17 HMBS-204ENST00000534956 547 ntTSL 55.7□□□□□ -1.52e-6■□□□□ 8.8
LIN28BQ6ZN17 AC087632.1-202ENST00000634847 1821 ntTSL 55.45□□□□□ -1.542e-6■□□□□ 8.8
LIN28BQ6ZN17 AC087632.1-201ENST00000634251 1973 ntTSL 1 (best)5.44□□□□□ -1.542e-6■□□□□ 8.8
LIN28BQ6ZN17 AC087632.1-212ENST00000635413 706 ntTSL 55.42□□□□□ -1.542e-6■□□□□ 8.8
LIN28BQ6ZN17 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.552e-6■□□□□ 8.8
LIN28BQ6ZN17 AC087632.1-206ENST00000635605 757 ntTSL 55.03□□□□□ -1.62e-6■□□□□ 8.8
LIN28BQ6ZN17 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.652e-6■□□□□ 8.8
LIN28BQ6ZN17 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC4.25□□□□□ -1.732e-6■□□□□ 8.8
LIN28BQ6ZN17 AC087632.1-214ENST00000635320 568 ntTSL 44.18□□□□□ -1.742e-6■□□□□ 8.8
LIN28BQ6ZN17 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.67□□□□□ -1.822e-6■□□□□ 8.8
LIN28BQ6ZN17 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC3.58□□□□□ -1.842e-6■□□□□ 8.8
LIN28BQ6ZN17 AC087632.1-215ENST00000558783 726 ntTSL 53.28□□□□□ -1.882e-6■□□□□ 8.8
LIN28BQ6ZN17 AC087632.1-207ENST00000634529 372 ntTSL 42.73□□□□□ -1.972e-6■□□□□ 8.8
LIN28BQ6ZN17 ALB-215ENST00000510166 532 ntTSL 310.21□□□□□ -0.771e-323■□□□□ 8.8
LIN28BQ6ZN17 ALB-204ENST00000441319 591 ntTSL 46.94□□□□□ -1.31e-323■□□□□ 8.8
LIN28BQ6ZN17 ALB-218ENST00000515133 665 ntTSL 24.57□□□□□ -1.681e-323■□□□□ 8.8
LIN28BQ6ZN17 ALB-217ENST00000514786 577 ntTSL 43.41□□□□□ -1.861e-323■□□□□ 8.8
LIN28BQ6ZN17 FGFR1-223ENST00000496296 1898 ntTSL 1 (best)21.98■■□□□ 1.113e-8■□□□□ 8.8
LIN28BQ6ZN17 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.883e-8■□□□□ 8.8
LIN28BQ6ZN17 FGFR1-217ENST00000470826 2281 ntTSL 1 (best)20.16■□□□□ 0.823e-8■□□□□ 8.8
LIN28BQ6ZN17 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.22■□□□□ 0.673e-8■□□□□ 8.8
LIN28BQ6ZN17 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.493e-8■□□□□ 8.8
LIN28BQ6ZN17 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.453e-8■□□□□ 8.8
LIN28BQ6ZN17 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.35■□□□□ 0.213e-8■□□□□ 8.8
LIN28BQ6ZN17 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC15.49■□□□□ 0.073e-8■□□□□ 8.8
LIN28BQ6ZN17 FGFR1-222ENST00000487647 1608 ntTSL 1 (best)15.39■□□□□ 0.053e-8■□□□□ 8.8
LIN28BQ6ZN17 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.38□□□□□ -0.113e-8■□□□□ 8.8
LIN28BQ6ZN17 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.133e-8■□□□□ 8.8
LIN28BQ6ZN17 FGFR1-231ENST00000527203 556 ntTSL 313.19□□□□□ -0.33e-8■□□□□ 8.8
LIN28BQ6ZN17 FGFR1-215ENST00000464163 545 ntTSL 412.39□□□□□ -0.433e-8■□□□□ 8.8
Retrieved 100 of 21,972 protein–RNA pairs in 483.7 ms