RNA–Protein interactions for RNA: ENST00000544216.7

LSM14A-203, Transcript of LSM14A, mRNA processing body assembly factor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LSM14A, Length 3,596 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM14A-203ENST00000544216 NISCHQ9Y2I1 1504 aa28.94■■■□□ 2.22
LSM14A-203ENST00000544216 SHROOM4Q9ULL8 1493 aa24.94■■□□□ 1.58
LSM14A-203ENST00000544216 DCAF8L2P0C7V8 631 aa24.67■■□□□ 1.54
LSM14A-203ENST00000544216 CCDC180Q9P1Z9 1646 aa24.5■■□□□ 1.51
LSM14A-203ENST00000544216 SUPT5HO00267 1087 aaKnown RBP24.43■■□□□ 1.5
LSM14A-203ENST00000544216 ZCCHC6Q5VYS8 1495 aaKnown RBP24.37■■□□□ 1.49
LSM14A-203ENST00000544216 DCAF1Q9Y4B6 1507 aa23.57■■□□□ 1.36
LSM14A-203ENST00000544216 CHIC1Q5VXU3 224 aa23.43■■□□□ 1.34
LSM14A-203ENST00000544216 ABCC9O60706 1549 aa23.3■■□□□ 1.32
LSM14A-203ENST00000544216 SCRIBQ14160 1630 aa23.21■■□□□ 1.31
LSM14A-203ENST00000544216 MYO15BQ96JP2 1530 aa23.14■■□□□ 1.29
LSM14A-203ENST00000544216 RSF1Q96T23 1441 aaPredicted RBP22.9■■□□□ 1.26
LSM14A-203ENST00000544216 LOC105371045A0A1W2PR82 267 aa22.87■■□□□ 1.25
LSM14A-203ENST00000544216 NACADO15069 1562 aa22.83■■□□□ 1.25
LSM14A-203ENST00000544216 CECR2Q9BXF3 1484 aa22.7■■□□□ 1.22
LSM14A-203ENST00000544216 TRIM41Q8WV44 630 aa22.68■■□□□ 1.22
LSM14A-203ENST00000544216 PCGF6Q9BYE7 350 aa22.66■■□□□ 1.22
LSM14A-203ENST00000544216 FAM9AQ8IZU1 332 aaPredicted RBP22.64■■□□□ 1.21
LSM14A-203ENST00000544216 EHMT2Q96KQ7 1210 aa22.58■■□□□ 1.21
LSM14A-203ENST00000544216 RB1CC1Q8TDY2 1594 aa22.57■■□□□ 1.2
LSM14A-203ENST00000544216 MROH2BQ7Z745 1585 aa22.54■■□□□ 1.2
LSM14A-203ENST00000544216 PABPN1Q86U42 306 aaKnown RBP eCLIP22.4■■□□□ 1.18
LSM14A-203ENST00000544216 WIZO95785 1651 aa22.38■■□□□ 1.17
LSM14A-203ENST00000544216 HRCP23327 699 aa22.33■■□□□ 1.17
LSM14A-203ENST00000544216 BAZ1AQ9NRL2 1556 aaPredicted RBP22.24■■□□□ 1.15
LSM14A-203ENST00000544216 TRIM26Q12899 539 aaPredicted RBP22.14■■□□□ 1.13
LSM14A-203ENST00000544216 PPARGC1BQ86YN6 1023 aaKnown RBP22.06■■□□□ 1.12
LSM14A-203ENST00000544216 UNC13AQ9UPW8 1703 aa22.05■■□□□ 1.12
LSM14A-203ENST00000544216 SMARCA4P51532 1647 aa22.04■■□□□ 1.12
LSM14A-203ENST00000544216 CCDC88BA6NC98 1476 aa21.99■■□□□ 1.11
LSM14A-203ENST00000544216 TOP2AP11388 1531 aaKnown RBP21.97■■□□□ 1.11
LSM14A-203ENST00000544216 ABCC8Q09428 1581 aa21.9■■□□□ 1.1
LSM14A-203ENST00000544216 BICRAQ9NZM4 1560 aa21.88■■□□□ 1.09
LSM14A-203ENST00000544216 SMARCA2P51531 1590 aa21.85■■□□□ 1.09
LSM14A-203ENST00000544216 TTBK1Q5TCY1 1321 aaPredicted RBP21.77■■□□□ 1.08
LSM14A-203ENST00000544216 EIF4G1Q04637 1599 aaKnown RBP21.75■■□□□ 1.07
LSM14A-203ENST00000544216 UBTFP17480 764 aaKnown RBP21.72■■□□□ 1.07
LSM14A-203ENST00000544216 SOGA1O94964 1423 aa21.7■■□□□ 1.06
LSM14A-203ENST00000544216 CSRNP3Q8WYN3 585 aa21.65■■□□□ 1.06
LSM14A-203ENST00000544216 ATAD2BQ9ULI0 1458 aa21.62■■□□□ 1.05
LSM14A-203ENST00000544216 BAZ1BQ9UIG0 1483 aaKnown RBP21.61■■□□□ 1.05
LSM14A-203ENST00000544216 RUSC2Q8N2Y8 1516 aa21.59■■□□□ 1.05
LSM14A-203ENST00000544216 WRNQ14191 1432 aaPredicted RBP eCLIP21.57■■□□□ 1.04
LSM14A-203ENST00000544216 ZEB1P37275 1124 aaPredicted RBP21.53■■□□□ 1.04
LSM14A-203ENST00000544216 RANGAP1P46060 587 aaPredicted RBP21.51■■□□□ 1.03
LSM14A-203ENST00000544216 PEG3Q9GZU2 1588 aa21.49■■□□□ 1.03
LSM14A-203ENST00000544216 CEP162Q5TB80 1403 aa21.49■■□□□ 1.03
LSM14A-203ENST00000544216 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.44■■□□□ 1.02
LSM14A-203ENST00000544216 TNIKQ9UKE5 1360 aa21.42■■□□□ 1.02
LSM14A-203ENST00000544216 EEA1Q15075 1411 aa21.42■■□□□ 1.02
LSM14A-203ENST00000544216 CCER1Q8TC90 406 aaPredicted RBP21.39■■□□□ 1.01
LSM14A-203ENST00000544216 SYNJ1O43426 1573 aa21.35■■□□□ 1.01
LSM14A-203ENST00000544216 GOLGA3Q08378 1498 aa21.33■■□□□ 1.01
LSM14A-203ENST00000544216 CEP164Q9UPV0 1460 aa21.23■□□□□ 0.99
LSM14A-203ENST00000544216 APLP2Q06481 763 aa21.21■□□□□ 0.99
LSM14A-203ENST00000544216 NCAPD3P42695 1498 aa21.19■□□□□ 0.98
LSM14A-203ENST00000544216 CLIP1P30622 1438 aa21.17■□□□□ 0.98
LSM14A-203ENST00000544216 RAPGEF2Q9Y4G8 1499 aa21.15■□□□□ 0.98
LSM14A-203ENST00000544216 HNRNPUL2Q1KMD3 747 aaKnown RBP21.12■□□□□ 0.97
LSM14A-203ENST00000544216 HMGXB3Q12766 1538 aa21.07■□□□□ 0.96
LSM14A-203ENST00000544216 TOP2BQ02880 1626 aa21.05■□□□□ 0.96
LSM14A-203ENST00000544216 KIF21BO75037 1637 aa21.04■□□□□ 0.96
LSM14A-203ENST00000544216 CUX1P39880 1505 aa20.97■□□□□ 0.95
LSM14A-203ENST00000544216 CFTRP13569 1480 aa20.97■□□□□ 0.95
LSM14A-203ENST00000544216 VPS8Q8N3P4 1428 aa20.97■□□□□ 0.95
LSM14A-203ENST00000544216 KIF27Q86VH2 1401 aa20.94■□□□□ 0.94
LSM14A-203ENST00000544216 BIVM-ERCC5R4GMW8 1640 aa20.9■□□□□ 0.94
LSM14A-203ENST00000544216 CADPSQ9ULU8 1353 aa20.88■□□□□ 0.93
LSM14A-203ENST00000544216 PRXQ9BXM0 1461 aa20.86■□□□□ 0.93
LSM14A-203ENST00000544216 CUX2O14529 1486 aa20.82■□□□□ 0.92
LSM14A-203ENST00000544216 CC2D2AQ9P2K1 1620 aa20.79■□□□□ 0.92
LSM14A-203ENST00000544216 KANK4Q5T7N3 995 aaPredicted RBP20.79■□□□□ 0.92
LSM14A-203ENST00000544216 DIEXFQ68CQ4 756 aaKnown RBP20.76■□□□□ 0.91
LSM14A-203ENST00000544216 ERICH3Q5RHP9 1530 aa20.76■□□□□ 0.91
LSM14A-203ENST00000544216 ATP1B4Q9UN42 357 aaPredicted RBP20.74■□□□□ 0.91
LSM14A-203ENST00000544216 IGF1RP08069 1367 aa20.73■□□□□ 0.91
LSM14A-203ENST00000544216 ITGAEP38570 1179 aa20.73■□□□□ 0.91
LSM14A-203ENST00000544216 P3H3Q8IVL6 736 aa20.72■□□□□ 0.91
LSM14A-203ENST00000544216 ARAP1Q96P48 1450 aa20.71■□□□□ 0.91
LSM14A-203ENST00000544216 FGD5Q6ZNL6 1462 aa20.7■□□□□ 0.9
LSM14A-203ENST00000544216 CARMIL1Q5VZK9 1371 aa20.69■□□□□ 0.9
LSM14A-203ENST00000544216 FANCD2Q9BXW9 1451 aa20.67■□□□□ 0.9
LSM14A-203ENST00000544216 NESP48681 1621 aa20.64■□□□□ 0.89
LSM14A-203ENST00000544216 ZNF316A6NFI3 1004 aaPredicted RBP20.62■□□□□ 0.89
LSM14A-203ENST00000544216 ARHGAP35Q9NRY4 1499 aa20.61■□□□□ 0.89
LSM14A-203ENST00000544216 DNAJC5BQ9UF47 199 aa20.59■□□□□ 0.89
LSM14A-203ENST00000544216 RAD54L2Q9Y4B4 1467 aa20.59■□□□□ 0.89
LSM14A-203ENST00000544216 PRDM2Q13029 1718 aa20.53■□□□□ 0.88
LSM14A-203ENST00000544216 FAM50AQ14320 339 aaKnown RBP20.47■□□□□ 0.87
LSM14A-203ENST00000544216 TOPBP1Q92547 1522 aa20.46■□□□□ 0.87
LSM14A-203ENST00000544216 POLA1P09884 1462 aaPredicted RBP20.46■□□□□ 0.87
LSM14A-203ENST00000544216 SCAF1Q9H7N4 1312 aaKnown RBP20.46■□□□□ 0.87
LSM14A-203ENST00000544216 CCNB3Q8WWL7 1395 aa20.46■□□□□ 0.87
LSM14A-203ENST00000544216 TDRD9Q8NDG6 1382 aaKnown RBP20.45■□□□□ 0.86
LSM14A-203ENST00000544216 YTHDC1Q96MU7 727 aaKnown RBP20.43■□□□□ 0.86
LSM14A-203ENST00000544216 DNMBPQ6XZF7 1577 aa20.41■□□□□ 0.86
LSM14A-203ENST00000544216 NEUROD1Q13562 356 aa20.4■□□□□ 0.86
LSM14A-203ENST00000544216 DHX57Q6P158 1386 aaKnown RBP20.39■□□□□ 0.85
LSM14A-203ENST00000544216 FHOD3Q2V2M9 1422 aa20.39■□□□□ 0.85
LSM14A-203ENST00000544216 CENPBP07199 599 aaPredicted RBP20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms