RNA–Protein interactions for RNA: ENST00000496296.5

FGFR1-223, Transcript of fibroblast growth factor receptor 1, human

TSL 1 (best)

Gene FGFR1, Length 1,898 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FGFR1-223	ENST00000496296	NISCH	Q9Y2I1	1504 aa		47.48	■■■■■ 5.19
FGFR1-223	ENST00000496296	CCDC180	Q9P1Z9	1646 aa		41.43	■■■■■ 4.22
FGFR1-223	ENST00000496296	ZCCHC6	Q5VYS8	1495 aa	Known RBP	39.87	■■■■□ 3.97
FGFR1-223	ENST00000496296	ABCC9	O60706	1549 aa		39.82	■■■■□ 3.96
FGFR1-223	ENST00000496296	DCAF8L2	P0C7V8	631 aa		39.3	■■■■□ 3.88
FGFR1-223	ENST00000496296	DCAF1	Q9Y4B6	1507 aa		39.29	■■■■□ 3.88
FGFR1-223	ENST00000496296	MYO15B	Q96JP2	1530 aa		38.85	■■■■□ 3.81
FGFR1-223	ENST00000496296	SHROOM4	Q9ULL8	1493 aa		38.71	■■■■□ 3.79
FGFR1-223	ENST00000496296	NACAD	O15069	1562 aa		38.63	■■■■□ 3.77
FGFR1-223	ENST00000496296	RB1CC1	Q8TDY2	1594 aa		38.31	■■■■□ 3.72
FGFR1-223	ENST00000496296	SCRIB	Q14160	1630 aa		38.07	■■■■□ 3.69
FGFR1-223	ENST00000496296	UNC13A	Q9UPW8	1703 aa		37.54	■■■■□ 3.6
FGFR1-223	ENST00000496296	PABPN1	Q86U42	306 aa	Known RBP eCLIP	37.3	■■■■□ 3.56
FGFR1-223	ENST00000496296	SUPT5H	O00267	1087 aa	Known RBP	37.27	■■■■□ 3.56
FGFR1-223	ENST00000496296	BICRA	Q9NZM4	1560 aa		37.1	■■■■□ 3.53
FGFR1-223	ENST00000496296	CECR2	Q9BXF3	1484 aa		36.86	■■■■□ 3.49
FGFR1-223	ENST00000496296	RSF1	Q96T23	1441 aa	Predicted RBP	36.82	■■■■□ 3.48
FGFR1-223	ENST00000496296	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	36.71	■■■■□ 3.47
FGFR1-223	ENST00000496296	DNAJC5B	Q9UF47	199 aa		36.69	■■■■□ 3.46
FGFR1-223	ENST00000496296	MROH2B	Q7Z745	1585 aa		36.66	■■■■□ 3.46
FGFR1-223	ENST00000496296	SMARCA4	P51532	1647 aa		36.5	■■■■□ 3.43
FGFR1-223	ENST00000496296	WIZ	O95785	1651 aa		36.35	■■■■□ 3.41
FGFR1-223	ENST00000496296	EIF4G1	Q04637	1599 aa	Known RBP	36.11	■■■■□ 3.37
FGFR1-223	ENST00000496296	PEG3	Q9GZU2	1588 aa		36.06	■■■■□ 3.36
FGFR1-223	ENST00000496296	TOP2A	P11388	1531 aa	Known RBP	36.02	■■■■□ 3.36
FGFR1-223	ENST00000496296	CC2D2A	Q9P2K1	1620 aa		35.97	■■■■□ 3.35
FGFR1-223	ENST00000496296	SMARCA2	P51531	1590 aa		35.94	■■■■□ 3.34
FGFR1-223	ENST00000496296	ATAD2B	Q9ULI0	1458 aa		35.92	■■■■□ 3.34
FGFR1-223	ENST00000496296	BAZ1B	Q9UIG0	1483 aa	Known RBP	35.75	■■■■□ 3.31
FGFR1-223	ENST00000496296	CHIC1	Q5VXU3	224 aa		35.67	■■■■□ 3.3
FGFR1-223	ENST00000496296	CCDC88B	A6NC98	1476 aa		35.63	■■■■□ 3.29
FGFR1-223	ENST00000496296	NCAPD3	P42695	1498 aa		35.63	■■■■□ 3.29
FGFR1-223	ENST00000496296	HMGXB3	Q12766	1538 aa		35.58	■■■■□ 3.29
FGFR1-223	ENST00000496296	TRIM41	Q8WV44	630 aa		35.09	■■■■□ 3.21
FGFR1-223	ENST00000496296	ABCC8	Q09428	1581 aa		34.85	■■■■□ 3.17
FGFR1-223	ENST00000496296	CFTR	P13569	1480 aa		34.83	■■■■□ 3.17
FGFR1-223	ENST00000496296	CADPS	Q9ULU8	1353 aa		34.74	■■■■□ 3.15
FGFR1-223	ENST00000496296	WRN	Q14191	1432 aa	Predicted RBP eCLIP	34.7	■■■■□ 3.15
FGFR1-223	ENST00000496296	PRDM2	Q13029	1718 aa		34.62	■■■■□ 3.13
FGFR1-223	ENST00000496296	SYNJ1	O43426	1573 aa		34.49	■■■■□ 3.11
FGFR1-223	ENST00000496296	NES	P48681	1621 aa		34.48	■■■■□ 3.11
FGFR1-223	ENST00000496296	LAMC3	Q9Y6N6	1575 aa		34.44	■■■■□ 3.1
FGFR1-223	ENST00000496296	FAM9A	Q8IZU1	332 aa	Predicted RBP	34.4	■■■■□ 3.1
FGFR1-223	ENST00000496296	TOP2B	Q02880	1626 aa		34.4	■■■■□ 3.1
FGFR1-223	ENST00000496296	FANCD2	Q9BXW9	1451 aa		34.35	■■■■□ 3.09
FGFR1-223	ENST00000496296	BIVM-ERCC5	R4GMW8	1640 aa		34.34	■■■■□ 3.09
FGFR1-223	ENST00000496296	CUX1	P39880	1505 aa		34.28	■■■■□ 3.08
FGFR1-223	ENST00000496296	ERCC6	Q03468	1493 aa		34.27	■■■■□ 3.08
FGFR1-223	ENST00000496296	LOC105371045	A0A1W2PR82	267 aa		34.26	■■■■□ 3.07
FGFR1-223	ENST00000496296	EEA1	Q15075	1411 aa		34.23	■■■■□ 3.07
FGFR1-223	ENST00000496296	PDS5B	Q9NTI5	1447 aa		34.21	■■■■□ 3.07
FGFR1-223	ENST00000496296	SOGA1	O94964	1423 aa		34.21	■■■■□ 3.07
FGFR1-223	ENST00000496296	CEP164	Q9UPV0	1460 aa		34.15	■■■■□ 3.06
FGFR1-223	ENST00000496296	KIF21A	Q7Z4S6	1674 aa		34.08	■■■■□ 3.05
FGFR1-223	ENST00000496296	RUSC2	Q8N2Y8	1516 aa		34.04	■■■■□ 3.04
FGFR1-223	ENST00000496296	CSRNP3	Q8WYN3	585 aa		34.03	■■■■□ 3.04
FGFR1-223	ENST00000496296	DNMBP	Q6XZF7	1577 aa		34.02	■■■■□ 3.04
FGFR1-223	ENST00000496296	TOPBP1	Q92547	1522 aa		33.95	■■■■□ 3.03
FGFR1-223	ENST00000496296	FGD5	Q6ZNL6	1462 aa		33.94	■■■■□ 3.02
FGFR1-223	ENST00000496296	EHMT2	Q96KQ7	1210 aa		33.9	■■■■□ 3.02
FGFR1-223	ENST00000496296	URB2	Q14146	1524 aa	Known RBP	33.87	■■■■□ 3.01
FGFR1-223	ENST00000496296	CUX2	O14529	1486 aa		33.86	■■■■□ 3.01
FGFR1-223	ENST00000496296	KIF27	Q86VH2	1401 aa		33.85	■■■■□ 3.01
FGFR1-223	ENST00000496296	THOC2	Q8NI27	1593 aa	Known RBP	33.84	■■■■□ 3.01
FGFR1-223	ENST00000496296	POLA1	P09884	1462 aa	Predicted RBP	33.78	■■■■□ 3
FGFR1-223	ENST00000496296	MRC2	Q9UBG0	1479 aa		33.74	■■■□□ 2.99
FGFR1-223	ENST00000496296	GOLGA3	Q08378	1498 aa		33.73	■■■□□ 2.99
FGFR1-223	ENST00000496296	KIF21B	O75037	1637 aa		33.73	■■■□□ 2.99
FGFR1-223	ENST00000496296	RAD54L2	Q9Y4B4	1467 aa		33.65	■■■□□ 2.98
FGFR1-223	ENST00000496296	ABCA10	Q8WWZ4	1543 aa		33.65	■■■□□ 2.98
FGFR1-223	ENST00000496296	UBTF	P17480	764 aa	Known RBP	33.62	■■■□□ 2.97
FGFR1-223	ENST00000496296	TNIK	Q9UKE5	1360 aa		33.61	■■■□□ 2.97
FGFR1-223	ENST00000496296	WDR62	O43379	1518 aa		33.6	■■■□□ 2.97
FGFR1-223	ENST00000496296	PCGF6	Q9BYE7	350 aa		33.6	■■■□□ 2.97
FGFR1-223	ENST00000496296	PRX	Q9BXM0	1461 aa		33.56	■■■□□ 2.96
FGFR1-223	ENST00000496296	ERICH3	Q5RHP9	1530 aa		33.53	■■■□□ 2.96
FGFR1-223	ENST00000496296	RAPGEF2	Q9Y4G8	1499 aa		33.52	■■■□□ 2.96
FGFR1-223	ENST00000496296	IGF1R	P08069	1367 aa		33.5	■■■□□ 2.95
FGFR1-223	ENST00000496296	WDR97	A6NE52	1622 aa		33.49	■■■□□ 2.95
FGFR1-223	ENST00000496296	HRC	P23327	699 aa		33.47	■■■□□ 2.95
FGFR1-223	ENST00000496296	TRIM26	Q12899	539 aa	Predicted RBP	33.47	■■■□□ 2.95
FGFR1-223	ENST00000496296	TARBP1	Q13395	1621 aa	Known RBP	33.42	■■■□□ 2.94
FGFR1-223	ENST00000496296	CEP162	Q5TB80	1403 aa		33.41	■■■□□ 2.94
FGFR1-223	ENST00000496296	CARMIL1	Q5VZK9	1371 aa		33.36	■■■□□ 2.93
FGFR1-223	ENST00000496296	TDRD9	Q8NDG6	1382 aa	Known RBP	33.36	■■■□□ 2.93
FGFR1-223	ENST00000496296	ABCA5	Q8WWZ7	1642 aa		33.35	■■■□□ 2.93
FGFR1-223	ENST00000496296	IFT140	Q96RY7	1462 aa		33.34	■■■□□ 2.93
FGFR1-223	ENST00000496296	GAPVD1	Q14C86	1478 aa		33.33	■■■□□ 2.93
FGFR1-223	ENST00000496296	CUL7	Q14999	1698 aa		33.28	■■■□□ 2.92
FGFR1-223	ENST00000496296	CLIP1	P30622	1438 aa		33.18	■■■□□ 2.9
FGFR1-223	ENST00000496296	AQR	O60306	1485 aa	Known RBP eCLIP	33.14	■■■□□ 2.9
FGFR1-223	ENST00000496296	PBRM1	Q86U86	1689 aa		33.1	■■■□□ 2.89
FGFR1-223	ENST00000496296	ZNF608	Q9ULD9	1512 aa	Predicted RBP	33.09	■■■□□ 2.89
FGFR1-223	ENST00000496296	GRIN2B	Q13224	1484 aa		33.09	■■■□□ 2.89
FGFR1-223	ENST00000496296	RANGAP1	P46060	587 aa	Predicted RBP	33.04	■■■□□ 2.88
FGFR1-223	ENST00000496296	EIF4G3	O43432	1585 aa	Known RBP	33	■■■□□ 2.87
FGFR1-223	ENST00000496296	FHAD1	B1AJZ9	1412 aa		32.98	■■■□□ 2.87
FGFR1-223	ENST00000496296	DNAJC5	Q9H3Z4	198 aa		32.97	■■■□□ 2.87
FGFR1-223	ENST00000496296	ADAMTS12	P58397	1594 aa		32.93	■■■□□ 2.86
FGFR1-223	ENST00000496296	VPS8	Q8N3P4	1428 aa		32.88	■■■□□ 2.85

Retrieved 100 of 20,778 RNA–protein pairs in 47 ms