Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
PCDHA1Q9Y5I3 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC26.89■■□□□ 1.89
PCDHA1Q9Y5I3 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
PCDHA1Q9Y5I3 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
PCDHA1Q9Y5I3 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC26.88■■□□□ 1.89
PCDHA1Q9Y5I3 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC26.88■■□□□ 1.89
PCDHA1Q9Y5I3 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC26.88■■□□□ 1.89
PCDHA1Q9Y5I3 AL356441.2-201ENST00000443009 864 ntBASIC26.88■■□□□ 1.89
PCDHA1Q9Y5I3 AC092028.1-203ENST00000608262 953 ntBASIC26.88■■□□□ 1.89
PCDHA1Q9Y5I3 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
PCDHA1Q9Y5I3 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
PCDHA1Q9Y5I3 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
PCDHA1Q9Y5I3 UNC93B8-201ENST00000511903 705 ntBASIC26.87■■□□□ 1.89
PCDHA1Q9Y5I3 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC26.87■■□□□ 1.89
PCDHA1Q9Y5I3 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
PCDHA1Q9Y5I3 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC26.87■■□□□ 1.89
PCDHA1Q9Y5I3 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
PCDHA1Q9Y5I3 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC26.86■■□□□ 1.89
PCDHA1Q9Y5I3 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC26.86■■□□□ 1.89
PCDHA1Q9Y5I3 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
PCDHA1Q9Y5I3 SENP5-202ENST00000419026 973 ntTSL 3 BASIC26.86■■□□□ 1.89
PCDHA1Q9Y5I3 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC26.86■■□□□ 1.89
PCDHA1Q9Y5I3 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC26.85■■□□□ 1.89
PCDHA1Q9Y5I3 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
PCDHA1Q9Y5I3 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC26.85■■□□□ 1.89
PCDHA1Q9Y5I3 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
PCDHA1Q9Y5I3 TK2-202ENST00000417693 1046 ntTSL 2 BASIC26.85■■□□□ 1.89
PCDHA1Q9Y5I3 TSPY9P-201ENST00000440215 945 ntBASIC26.85■■□□□ 1.89
PCDHA1Q9Y5I3 TSPY11P-201ENST00000442607 1045 ntBASIC26.85■■□□□ 1.89
PCDHA1Q9Y5I3 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC26.85■■□□□ 1.89
PCDHA1Q9Y5I3 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC26.85■■□□□ 1.89
PCDHA1Q9Y5I3 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
PCDHA1Q9Y5I3 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
PCDHA1Q9Y5I3 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC26.84■■□□□ 1.89
PCDHA1Q9Y5I3 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC26.84■■□□□ 1.89
PCDHA1Q9Y5I3 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC26.84■■□□□ 1.89
PCDHA1Q9Y5I3 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
PCDHA1Q9Y5I3 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC26.83■■□□□ 1.89
PCDHA1Q9Y5I3 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
PCDHA1Q9Y5I3 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC26.83■■□□□ 1.89
PCDHA1Q9Y5I3 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
PCDHA1Q9Y5I3 MIR6089-201ENST00000616698 64 ntBASIC26.83■■□□□ 1.89
PCDHA1Q9Y5I3 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC26.83■■□□□ 1.89
PCDHA1Q9Y5I3 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
PCDHA1Q9Y5I3 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
PCDHA1Q9Y5I3 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
PCDHA1Q9Y5I3 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
PCDHA1Q9Y5I3 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
PCDHA1Q9Y5I3 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
PCDHA1Q9Y5I3 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
PCDHA1Q9Y5I3 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC26.82■■□□□ 1.88
PCDHA1Q9Y5I3 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC26.82■■□□□ 1.88
PCDHA1Q9Y5I3 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC26.82■■□□□ 1.88
PCDHA1Q9Y5I3 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC26.82■■□□□ 1.88
PCDHA1Q9Y5I3 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC26.82■■□□□ 1.88
PCDHA1Q9Y5I3 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
PCDHA1Q9Y5I3 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC26.82■■□□□ 1.88
PCDHA1Q9Y5I3 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC26.81■■□□□ 1.88
PCDHA1Q9Y5I3 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
PCDHA1Q9Y5I3 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC26.81■■□□□ 1.88
PCDHA1Q9Y5I3 GRAMD4P7-201ENST00000578182 1232 ntBASIC26.81■■□□□ 1.88
PCDHA1Q9Y5I3 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
PCDHA1Q9Y5I3 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
PCDHA1Q9Y5I3 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
PCDHA1Q9Y5I3 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
PCDHA1Q9Y5I3 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
PCDHA1Q9Y5I3 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
PCDHA1Q9Y5I3 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC26.8■■□□□ 1.88
PCDHA1Q9Y5I3 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC26.8■■□□□ 1.88
PCDHA1Q9Y5I3 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
PCDHA1Q9Y5I3 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC26.8■■□□□ 1.88
PCDHA1Q9Y5I3 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC26.8■■□□□ 1.88
PCDHA1Q9Y5I3 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
PCDHA1Q9Y5I3 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC26.8■■□□□ 1.88
PCDHA1Q9Y5I3 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
PCDHA1Q9Y5I3 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC26.79■■□□□ 1.88
PCDHA1Q9Y5I3 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC26.79■■□□□ 1.88
PCDHA1Q9Y5I3 LSR-205ENST00000427250 1606 ntTSL 2 BASIC26.79■■□□□ 1.88
PCDHA1Q9Y5I3 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
PCDHA1Q9Y5I3 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
PCDHA1Q9Y5I3 KRT16P3-201ENST00000439127 1283 ntBASIC26.78■■□□□ 1.88
PCDHA1Q9Y5I3 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC26.78■■□□□ 1.88
PCDHA1Q9Y5I3 AC131212.1-201ENST00000613771 668 ntBASIC26.78■■□□□ 1.88
PCDHA1Q9Y5I3 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
PCDHA1Q9Y5I3 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC26.77■■□□□ 1.88
PCDHA1Q9Y5I3 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC26.77■■□□□ 1.88
PCDHA1Q9Y5I3 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
PCDHA1Q9Y5I3 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC26.77■■□□□ 1.88
PCDHA1Q9Y5I3 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
PCDHA1Q9Y5I3 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC26.77■■□□□ 1.88
PCDHA1Q9Y5I3 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC26.77■■□□□ 1.88
PCDHA1Q9Y5I3 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC26.77■■□□□ 1.88
PCDHA1Q9Y5I3 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC26.77■■□□□ 1.88
PCDHA1Q9Y5I3 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC26.77■■□□□ 1.88
PCDHA1Q9Y5I3 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
PCDHA1Q9Y5I3 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC26.77■■□□□ 1.88
PCDHA1Q9Y5I3 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC26.77■■□□□ 1.88
PCDHA1Q9Y5I3 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
PCDHA1Q9Y5I3 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
PCDHA1Q9Y5I3 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms