Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 AC022616.5-201ENST00000518796 181 ntBASIC22.36■■□□□ 1.17
TRIM40Q6P9F5 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
TRIM40Q6P9F5 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC22.36■■□□□ 1.17
TRIM40Q6P9F5 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
TRIM40Q6P9F5 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC22.36■■□□□ 1.17
TRIM40Q6P9F5 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
TRIM40Q6P9F5 AP003733.4-201ENST00000623785 1697 ntBASIC22.36■■□□□ 1.17
TRIM40Q6P9F5 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
TRIM40Q6P9F5 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
TRIM40Q6P9F5 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM40Q6P9F5 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM40Q6P9F5 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM40Q6P9F5 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.35■■□□□ 1.17
TRIM40Q6P9F5 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM40Q6P9F5 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM40Q6P9F5 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM40Q6P9F5 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM40Q6P9F5 BEX3-202ENST00000372634 753 ntTSL 2 BASIC22.35■■□□□ 1.17
TRIM40Q6P9F5 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM40Q6P9F5 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC22.35■■□□□ 1.17
TRIM40Q6P9F5 MIR6089-201ENST00000616698 64 ntBASIC22.35■■□□□ 1.17
TRIM40Q6P9F5 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM40Q6P9F5 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC22.35■■□□□ 1.17
TRIM40Q6P9F5 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
TRIM40Q6P9F5 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
TRIM40Q6P9F5 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC22.34■■□□□ 1.17
TRIM40Q6P9F5 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC22.34■■□□□ 1.17
TRIM40Q6P9F5 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
TRIM40Q6P9F5 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC22.34■■□□□ 1.17
TRIM40Q6P9F5 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
TRIM40Q6P9F5 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
TRIM40Q6P9F5 SSSCA1-AS1-201ENST00000567594 614 ntBASIC22.33■■□□□ 1.17
TRIM40Q6P9F5 PVT1_1.1-201ENST00000615125 194 ntBASIC22.33■■□□□ 1.17
TRIM40Q6P9F5 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC22.33■■□□□ 1.16
TRIM40Q6P9F5 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC22.33■■□□□ 1.16
TRIM40Q6P9F5 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
TRIM40Q6P9F5 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.32■■□□□ 1.16
TRIM40Q6P9F5 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC22.32■■□□□ 1.16
TRIM40Q6P9F5 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC22.32■■□□□ 1.16
TRIM40Q6P9F5 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
TRIM40Q6P9F5 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
TRIM40Q6P9F5 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
TRIM40Q6P9F5 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC22.31■■□□□ 1.16
TRIM40Q6P9F5 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22.31■■□□□ 1.16
TRIM40Q6P9F5 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
TRIM40Q6P9F5 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
TRIM40Q6P9F5 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC22.31■■□□□ 1.16
TRIM40Q6P9F5 PREB-202ENST00000406567 1910 ntTSL 5 BASIC22.31■■□□□ 1.16
TRIM40Q6P9F5 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRIM40Q6P9F5 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC22.31■■□□□ 1.16
TRIM40Q6P9F5 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC22.3■■□□□ 1.16
TRIM40Q6P9F5 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC22.3■■□□□ 1.16
TRIM40Q6P9F5 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
TRIM40Q6P9F5 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC22.3■■□□□ 1.16
TRIM40Q6P9F5 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TRIM40Q6P9F5 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM40Q6P9F5 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM40Q6P9F5 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
TRIM40Q6P9F5 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM40Q6P9F5 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC22.29■■□□□ 1.16
TRIM40Q6P9F5 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM40Q6P9F5 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM40Q6P9F5 EED-207ENST00000528180 1745 ntTSL 5 BASIC22.28■■□□□ 1.16
TRIM40Q6P9F5 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC22.28■■□□□ 1.16
TRIM40Q6P9F5 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC22.28■■□□□ 1.16
TRIM40Q6P9F5 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRIM40Q6P9F5 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRIM40Q6P9F5 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRIM40Q6P9F5 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
TRIM40Q6P9F5 LSR-205ENST00000427250 1606 ntTSL 2 BASIC22.28■■□□□ 1.16
TRIM40Q6P9F5 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRIM40Q6P9F5 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC22.27■■□□□ 1.16
TRIM40Q6P9F5 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRIM40Q6P9F5 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRIM40Q6P9F5 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC22.27■■□□□ 1.16
TRIM40Q6P9F5 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC22.27■■□□□ 1.16
TRIM40Q6P9F5 AC090877.2-201ENST00000558441 1738 ntBASIC22.27■■□□□ 1.16
TRIM40Q6P9F5 MIR4508-201ENST00000584178 70 ntBASIC22.27■■□□□ 1.16
TRIM40Q6P9F5 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC22.27■■□□□ 1.16
TRIM40Q6P9F5 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
TRIM40Q6P9F5 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TRIM40Q6P9F5 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TRIM40Q6P9F5 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRIM40Q6P9F5 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRIM40Q6P9F5 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRIM40Q6P9F5 AC011551.1-201ENST00000614101 683 ntBASIC22.26■■□□□ 1.15
TRIM40Q6P9F5 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC22.26■■□□□ 1.15
TRIM40Q6P9F5 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC22.26■■□□□ 1.15
TRIM40Q6P9F5 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TRIM40Q6P9F5 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC22.25■■□□□ 1.15
TRIM40Q6P9F5 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
TRIM40Q6P9F5 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TRIM40Q6P9F5 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC22.25■■□□□ 1.15
TRIM40Q6P9F5 YBX1P4-201ENST00000392794 808 ntBASIC22.25■■□□□ 1.15
TRIM40Q6P9F5 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC22.25■■□□□ 1.15
TRIM40Q6P9F5 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TRIM40Q6P9F5 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
TRIM40Q6P9F5 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC22.25■■□□□ 1.15
TRIM40Q6P9F5 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TRIM40Q6P9F5 KRT8P33-201ENST00000508125 1423 ntBASIC22.24■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms