Protein–RNA interactions for Protein: Q6ZW05

PTCHD4, Patched domain-containing protein 4, humanhuman

Predictions only

Length 846 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4Q6ZW05 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD4Q6ZW05 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD4Q6ZW05 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD4Q6ZW05 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD4Q6ZW05 AC060814.1-201ENST00000554326 538 ntBASIC21.48■■□□□ 1.03
PTCHD4Q6ZW05 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.48■■□□□ 1.03
PTCHD4Q6ZW05 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD4Q6ZW05 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD4Q6ZW05 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD4Q6ZW05 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD4Q6ZW05 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD4Q6ZW05 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD4Q6ZW05 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD4Q6ZW05 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
PTCHD4Q6ZW05 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD4Q6ZW05 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD4Q6ZW05 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
PTCHD4Q6ZW05 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD4Q6ZW05 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD4Q6ZW05 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD4Q6ZW05 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTCHD4Q6ZW05 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTCHD4Q6ZW05 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PTCHD4Q6ZW05 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTCHD4Q6ZW05 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PTCHD4Q6ZW05 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC21.46■■□□□ 1.03
PTCHD4Q6ZW05 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.46■■□□□ 1.03
PTCHD4Q6ZW05 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTCHD4Q6ZW05 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.45■■□□□ 1.03
PTCHD4Q6ZW05 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
PTCHD4Q6ZW05 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.45■■□□□ 1.03
PTCHD4Q6ZW05 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PTCHD4Q6ZW05 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PTCHD4Q6ZW05 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTCHD4Q6ZW05 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.45■■□□□ 1.02
PTCHD4Q6ZW05 MIR639-201ENST00000384974 98 ntBASIC21.45■■□□□ 1.02
PTCHD4Q6ZW05 AC025884.2-201ENST00000553429 711 ntBASIC21.45■■□□□ 1.02
PTCHD4Q6ZW05 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
PTCHD4Q6ZW05 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.45■■□□□ 1.02
PTCHD4Q6ZW05 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTCHD4Q6ZW05 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD4Q6ZW05 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
PTCHD4Q6ZW05 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD4Q6ZW05 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
PTCHD4Q6ZW05 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD4Q6ZW05 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD4Q6ZW05 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD4Q6ZW05 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.44■■□□□ 1.02
PTCHD4Q6ZW05 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
PTCHD4Q6ZW05 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD4Q6ZW05 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.43■■□□□ 1.02
PTCHD4Q6ZW05 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD4Q6ZW05 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD4Q6ZW05 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD4Q6ZW05 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.43■■□□□ 1.02
PTCHD4Q6ZW05 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
PTCHD4Q6ZW05 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD4Q6ZW05 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD4Q6ZW05 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.43■■□□□ 1.02
PTCHD4Q6ZW05 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD4Q6ZW05 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD4Q6ZW05 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.43■■□□□ 1.02
PTCHD4Q6ZW05 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD4Q6ZW05 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.43■■□□□ 1.02
PTCHD4Q6ZW05 DUSP8P5-201ENST00000422884 1815 ntBASIC21.43■■□□□ 1.02
PTCHD4Q6ZW05 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
PTCHD4Q6ZW05 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTCHD4Q6ZW05 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTCHD4Q6ZW05 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.42■■□□□ 1.02
PTCHD4Q6ZW05 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
PTCHD4Q6ZW05 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PTCHD4Q6ZW05 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTCHD4Q6ZW05 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTCHD4Q6ZW05 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PTCHD4Q6ZW05 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTCHD4Q6ZW05 PFN2-211ENST00000489155 636 ntTSL 4 BASIC21.41■■□□□ 1.02
PTCHD4Q6ZW05 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.41■■□□□ 1.02
PTCHD4Q6ZW05 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
PTCHD4Q6ZW05 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.41■■□□□ 1.02
PTCHD4Q6ZW05 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTCHD4Q6ZW05 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTCHD4Q6ZW05 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.41■■□□□ 1.02
PTCHD4Q6ZW05 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.41■■□□□ 1.02
PTCHD4Q6ZW05 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTCHD4Q6ZW05 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
PTCHD4Q6ZW05 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.4■■□□□ 1.02
PTCHD4Q6ZW05 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC21.4■■□□□ 1.02
PTCHD4Q6ZW05 AC092296.2-201ENST00000589470 999 ntBASIC21.4■■□□□ 1.02
PTCHD4Q6ZW05 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
PTCHD4Q6ZW05 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTCHD4Q6ZW05 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.4■■□□□ 1.02
PTCHD4Q6ZW05 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.4■■□□□ 1.02
PTCHD4Q6ZW05 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTCHD4Q6ZW05 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
PTCHD4Q6ZW05 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PTCHD4Q6ZW05 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PTCHD4Q6ZW05 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PTCHD4Q6ZW05 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
PTCHD4Q6ZW05 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PTCHD4Q6ZW05 AC004812.2-201ENST00000611079 2094 ntBASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms