Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC7.61□□□□□ -1.194e-8■□□□□ 10.8
LIN28BQ6ZN17 DDX24-209ENST00000621632 5612 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.24e-8■□□□□ 10.8
LIN28BQ6ZN17 CAND1-203ENST00000539434 772 ntTSL 27.15□□□□□ -1.264e-8■□□□□ 10.8
LIN28BQ6ZN17 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC7.02□□□□□ -1.294e-8■□□□□ 10.8
LIN28BQ6ZN17 EPS15-205ENST00000465467 374 ntTSL 56.2□□□□□ -1.424e-8■□□□□ 10.8
LIN28BQ6ZN17 EPS15-206ENST00000471391 731 ntTSL 25.61□□□□□ -1.514e-8■□□□□ 10.8
LIN28BQ6ZN17 NIPSNAP2-202ENST00000415967 872 ntTSL 35.42□□□□□ -1.544e-8■□□□□ 10.8
LIN28BQ6ZN17 VDAC2-205ENST00000413289 457 ntTSL 35.2□□□□□ -1.584e-8■□□□□ 10.8
LIN28BQ6ZN17 DDX24-204ENST00000553451 486 ntTSL 35.1□□□□□ -1.594e-8■□□□□ 10.8
LIN28BQ6ZN17 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC4.72□□□□□ -1.654e-8■□□□□ 10.8
LIN28BQ6ZN17 NIPSNAP2-211ENST00000497279 4255 ntTSL 24.5□□□□□ -1.694e-8■□□□□ 10.8
LIN28BQ6ZN17 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.924e-8■□□□□ 10.8
LIN28BQ6ZN17 GART-211ENST00000460305 389 ntTSL 1 (best)2.96□□□□□ -1.944e-8■□□□□ 10.8
LIN28BQ6ZN17 NIPSNAP2-209ENST00000472404 250 ntTSL 51.03□□□□□ -2.244e-8■□□□□ 10.8
LIN28BQ6ZN17 SERPINA6-203ENST00000557225 719 ntTSL 28.76□□□□□ -1.012e-6■□□□□ 10.8
LIN28BQ6ZN17 SERPINA6-202ENST00000555056 1609 ntTSL 28.3□□□□□ -1.082e-6■□□□□ 10.8
LIN28BQ6ZN17 SERPINA6-201ENST00000341584 1534 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.132e-6■□□□□ 10.8
LIN28BQ6ZN17 CPNE3-208ENST00000614678 4201 ntTSL 1 (best)6.48□□□□□ -1.377e-6■□□□□ 10.8
LIN28BQ6ZN17 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.437e-6■□□□□ 10.8
LIN28BQ6ZN17 ZFHX3-203ENST00000397992 13841 ntTSL 1 (best) BASIC8.2□□□□□ -1.11e-6■□□□□ 10.8
LIN28BQ6ZN17 ZFHX3-201ENST00000268489 16064 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.151e-6■□□□□ 10.8
LIN28BQ6ZN17 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC6.75□□□□□ -1.331e-6■□□□□ 10.8
LIN28BQ6ZN17 JTB-206ENST00000471173 754 ntTSL 324.51■■□□□ 1.514e-11■□□□□ 10.8
LIN28BQ6ZN17 JTB-205ENST00000461365 542 ntTSL 518.15■□□□□ 0.54e-11■□□□□ 10.8
LIN28BQ6ZN17 ILF2-204ENST00000480213 1008 ntTSL 58.06□□□□□ -1.126e-7■□□□□ 10.7
LIN28BQ6ZN17 AFP-203ENST00000506820 476 ntTSL 23.51□□□□□ -1.853e-42■□□□□ 10.7
LIN28BQ6ZN17 NDUFS5-201ENST00000372967 544 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.152e-10■□□□□ 10.7
LIN28BQ6ZN17 NDUFS5-202ENST00000372969 548 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.152e-10■□□□□ 10.7
LIN28BQ6ZN17 XPO1-214ENST00000461407 2676 ntTSL 212.99□□□□□ -0.332e-10■□□□□ 10.7
LIN28BQ6ZN17 SUPV3L1-201ENST00000359655 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.372e-6■□□□□ 10.7
LIN28BQ6ZN17 XPO1-222ENST00000492182 827 ntTSL 211.63□□□□□ -0.552e-10■□□□□ 10.7
LIN28BQ6ZN17 SUPV3L1-202ENST00000422378 794 ntTSL 59.97□□□□□ -0.812e-6■□□□□ 10.7
LIN28BQ6ZN17 XPO1-223ENST00000494468 562 ntTSL 33.17□□□□□ -1.92e-10■□□□□ 10.7
LIN28BQ6ZN17 FDPS-208ENST00000470171 746 ntTSL 217.31■□□□□ 0.361e-9■□□□□ 10.7
LIN28BQ6ZN17 RTN4-210ENST00000427710 589 ntTSL 416.78■□□□□ 0.282e-12■□□□□ 10.7
LIN28BQ6ZN17 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.089e-8■□□□□ 10.7
LIN28BQ6ZN17 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.169e-8■□□□□ 10.7
LIN28BQ6ZN17 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.219e-8■□□□□ 10.7
LIN28BQ6ZN17 PRAME-203ENST00000402697 2057 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.359e-8■□□□□ 10.7
LIN28BQ6ZN17 PRAME-213ENST00000492657 2831 ntTSL 1 (best)12.82□□□□□ -0.369e-8■□□□□ 10.7
LIN28BQ6ZN17 PRAME-201ENST00000398741 2202 ntAPPRIS P2 TSL 5 BASIC12.67□□□□□ -0.389e-8■□□□□ 10.7
LIN28BQ6ZN17 C14orf2-208ENST00000554713 1058 ntTSL 1 (best) BASIC13.2□□□□□ -0.33e-10■□□□□ 10.7
LIN28BQ6ZN17 C14orf2-212ENST00000557260 856 ntTSL 1 (best)11.53□□□□□ -0.563e-10■□□□□ 10.7
LIN28BQ6ZN17 C14orf2-207ENST00000554528 526 ntTSL 29.36□□□□□ -0.913e-10■□□□□ 10.7
LIN28BQ6ZN17 C14orf2-205ENST00000554089 932 ntTSL 1 (best)9.09□□□□□ -0.953e-10■□□□□ 10.7
LIN28BQ6ZN17 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.017e-18■□□□□ 10.7
LIN28BQ6ZN17 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.157e-18■□□□□ 10.7
LIN28BQ6ZN17 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.217e-18■□□□□ 10.7
LIN28BQ6ZN17 ENO2-209ENST00000538763 1646 ntTSL 5 BASIC13.45□□□□□ -0.267e-18■□□□□ 10.7
LIN28BQ6ZN17 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC11.93□□□□□ -0.57e-18■□□□□ 10.7
LIN28BQ6ZN17 MYL6-205ENST00000546845 452 ntTSL 310.35□□□□□ -0.751e-13■□□□□ 10.7
LIN28BQ6ZN17 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.019e-19■□□□□ 10.7
LIN28BQ6ZN17 SLC17A9-202ENST00000370351 3580 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.369e-19■□□□□ 10.7
LIN28BQ6ZN17 SLC17A9-207ENST00000488738 3992 ntTSL 212.5□□□□□ -0.419e-19■□□□□ 10.7
LIN28BQ6ZN17 PCSK9-201ENST00000302118 3637 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.492e-11■□□□□ 10.7
LIN28BQ6ZN17 PCSK9-202ENST00000490692 3891 ntTSL 210.38□□□□□ -0.752e-11■□□□□ 10.7
LIN28BQ6ZN17 LDHB-205ENST00000470280 710 ntTSL 211.86□□□□□ -0.515e-14■□□□□ 10.7
LIN28BQ6ZN17 LDHB-204ENST00000450584 732 ntTSL 310.82□□□□□ -0.685e-14■□□□□ 10.7
LIN28BQ6ZN17 LDHB-202ENST00000396075 744 ntTSL 39.58□□□□□ -0.885e-14■□□□□ 10.7
LIN28BQ6ZN17 LDHB-208ENST00000539782 487 ntTSL 38.35□□□□□ -1.075e-14■□□□□ 10.7
LIN28BQ6ZN17 LDHAP4-201ENST00000397561 998 ntBASIC9.61□□□□□ -0.871e-7■□□□□ 10.7
LIN28BQ6ZN17 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.9■□□□□ 0.789e-7■□□□□ 10.7
LIN28BQ6ZN17 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.22□□□□□ -0.136e-8■□□□□ 10.7
LIN28BQ6ZN17 MRPL45-204ENST00000619548 1554 ntTSL 3 BASIC13.15□□□□□ -0.32e-9■□□□□ 10.7
LIN28BQ6ZN17 MRPL45-203ENST00000613675 1705 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.52e-9■□□□□ 10.7
LIN28BQ6ZN17 MCCC2-206ENST00000509539 895 ntTSL 311.36□□□□□ -0.596e-8■□□□□ 10.7
LIN28BQ6ZN17 TBC1D16-201ENST00000310924 10936 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.86e-8■□□□□ 10.7
LIN28BQ6ZN17 XRCC6-208ENST00000478914 550 ntTSL 29.95□□□□□ -0.826e-8■□□□□ 10.7
LIN28BQ6ZN17 SMARCA1-204ENST00000478420 561 ntTSL 33.88□□□□□ -1.792e-10■□□□□ 10.7
LIN28BQ6ZN17 KRT8-208ENST00000547031 883 ntTSL 218.7■□□□□ 0.581e-8■□□□□ 10.6
LIN28BQ6ZN17 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.531e-8■□□□□ 10.6
LIN28BQ6ZN17 KRT8-213ENST00000550170 2202 ntTSL 517.5■□□□□ 0.391e-8■□□□□ 10.6
LIN28BQ6ZN17 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.43■□□□□ 0.381e-8■□□□□ 10.6
LIN28BQ6ZN17 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.381e-8■□□□□ 10.6
LIN28BQ6ZN17 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.011e-8■□□□□ 10.6
LIN28BQ6ZN17 KRT8-203ENST00000546583 2862 ntTSL 514.6□□□□□ -0.071e-8■□□□□ 10.6
LIN28BQ6ZN17 KRT8-211ENST00000549176 770 ntTSL 212.59□□□□□ -0.391e-8■□□□□ 10.6
LIN28BQ6ZN17 CNOT1-205ENST00000563283 551 ntTSL 35.67□□□□□ -1.53e-7■□□□□ 10.6
LIN28BQ6ZN17 CPED1-204ENST00000428526 2219 ntTSL 28.39□□□□□ -1.075e-8■□□□□ 10.6
LIN28BQ6ZN17 CPED1-205ENST00000443817 1118 ntTSL 1 (best)4.07□□□□□ -1.765e-8■□□□□ 10.6
LIN28BQ6ZN17 RPL4-217ENST00000569696 569 ntTSL 512.76□□□□□ -0.377e-10■□□□□ 10.6
LIN28BQ6ZN17 RPL4-214ENST00000567229 2003 ntTSL 512.76□□□□□ -0.377e-10■□□□□ 10.6
LIN28BQ6ZN17 RPL4-215ENST00000568588 1864 ntTSL 2 BASIC12.23□□□□□ -0.457e-10■□□□□ 10.6
LIN28BQ6ZN17 RPL4-201ENST00000307961 2769 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.797e-10■□□□□ 10.6
LIN28BQ6ZN17 RPL4-203ENST00000561775 1396 ntTSL 58.35□□□□□ -1.077e-10■□□□□ 10.6
LIN28BQ6ZN17 RPL4-207ENST00000564647 1110 ntTSL 25.86□□□□□ -1.477e-10■□□□□ 10.6
LIN28BQ6ZN17 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.797e-6■□□□□ 10.6
LIN28BQ6ZN17 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC26.25■■□□□ 1.797e-6■□□□□ 10.6
LIN28BQ6ZN17 TMEM50B-204ENST00000442441 982 ntTSL 1 (best)23.82■■□□□ 1.47e-6■□□□□ 10.6
LIN28BQ6ZN17 SERP1-208ENST00000491660 830 ntTSL 2 BASIC23.5■■□□□ 1.356e-16■□□□□ 10.6
LIN28BQ6ZN17 WARS-207ENST00000553524 707 ntTSL 322.05■■□□□ 1.127e-6■□□□□ 10.6
LIN28BQ6ZN17 CROCC-205ENST00000466256 1868 ntTSL 521.75■■□□□ 1.078e-11■□□□□ 10.6
LIN28BQ6ZN17 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.027e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-218ENST00000554772 562 ntTSL 320.36■□□□□ 0.857e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-214ENST00000554331 831 ntTSL 219.52■□□□□ 0.727e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-236ENST00000556783 567 ntTSL 519.52■□□□□ 0.727e-6■□□□□ 10.6
LIN28BQ6ZN17 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.15■□□□□ 0.667e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-239ENST00000557239 471 ntTSL 418.93■□□□□ 0.627e-6■□□□□ 10.6
LIN28BQ6ZN17 DNAJC4-206ENST00000537109 1340 ntTSL 218.68■□□□□ 0.587e-6■□□□□ 10.6
LIN28BQ6ZN17 DNAJC4-209ENST00000542376 546 ntTSL 218.11■□□□□ 0.497e-6■□□□□ 10.6
Retrieved 100 of 21,972 protein–RNA pairs in 440.4 ms