RNA–Protein interactions for RNA: ENST00000396075.5

LDHB-202, Transcript of lactate dehydrogenase B, humanhuman

TSL 3

Gene LDHB, Length 744 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHB-202ENST00000396075 NISCHQ9Y2I1 1504 aa20.63■□□□□ 0.89
LDHB-202ENST00000396075 AEBP2Q6ZN18 517 aaPredicted RBP20.01■□□□□ 0.79
LDHB-202ENST00000396075 CHIC1Q5VXU3 224 aa19.04■□□□□ 0.64
LDHB-202ENST00000396075 ABCC9O60706 1549 aa18.57■□□□□ 0.56
LDHB-202ENST00000396075 CCDC180Q9P1Z9 1646 aa18.46■□□□□ 0.55
LDHB-202ENST00000396075 DNAJC5BQ9UF47 199 aa18.03■□□□□ 0.48
LDHB-202ENST00000396075 RB1CC1Q8TDY2 1594 aa17.56■□□□□ 0.4
LDHB-202ENST00000396075 DNAJC5Q9H3Z4 198 aa17.55■□□□□ 0.4
LDHB-202ENST00000396075 DCAF8L2P0C7V8 631 aa17.5■□□□□ 0.39
LDHB-202ENST00000396075 NACADO15069 1562 aa17.47■□□□□ 0.39
LDHB-202ENST00000396075 SENP3Q9H4L4 574 aaPredicted RBP17.4■□□□□ 0.38
LDHB-202ENST00000396075 UNC13AQ9UPW8 1703 aa17.27■□□□□ 0.36
LDHB-202ENST00000396075 MYO15BQ96JP2 1530 aa17.27■□□□□ 0.36
LDHB-202ENST00000396075 PABPN1Q86U42 306 aaKnown RBP eCLIP17.27■□□□□ 0.36
LDHB-202ENST00000396075 ZCCHC6Q5VYS8 1495 aaKnown RBP17.09■□□□□ 0.33
LDHB-202ENST00000396075 DCAF1Q9Y4B6 1507 aa17.08■□□□□ 0.32
LDHB-202ENST00000396075 BICRAQ9NZM4 1560 aa17.06■□□□□ 0.32
LDHB-202ENST00000396075 PHF23Q9BUL5 403 aaPredicted RBP17.01■□□□□ 0.31
LDHB-202ENST00000396075 SHROOM4Q9ULL8 1493 aa16.86■□□□□ 0.29
LDHB-202ENST00000396075 SCRIBQ14160 1630 aa16.78■□□□□ 0.28
LDHB-202ENST00000396075 CC2D2AQ9P2K1 1620 aa16.75■□□□□ 0.27
LDHB-202ENST00000396075 CECR2Q9BXF3 1484 aa16.69■□□□□ 0.26
LDHB-202ENST00000396075 EIF4G1Q04637 1599 aaKnown RBP16.63■□□□□ 0.25
LDHB-202ENST00000396075 TRIM41Q8WV44 630 aa16.2■□□□□ 0.18
LDHB-202ENST00000396075 NCAPD3P42695 1498 aa16.11■□□□□ 0.17
LDHB-202ENST00000396075 SMARCA2P51531 1590 aa16.07■□□□□ 0.16
LDHB-202ENST00000396075 BAZ1AQ9NRL2 1556 aaPredicted RBP16.04■□□□□ 0.16
LDHB-202ENST00000396075 ATAD2BQ9ULI0 1458 aa16.04■□□□□ 0.16
LDHB-202ENST00000396075 FOXD1Q16676 465 aa16.04■□□□□ 0.16
LDHB-202ENST00000396075 SMARCA4P51532 1647 aa16.04■□□□□ 0.16
LDHB-202ENST00000396075 ERCC6Q03468 1493 aa16■□□□□ 0.15
LDHB-202ENST00000396075 HMGXB3Q12766 1538 aa15.98■□□□□ 0.15
LDHB-202ENST00000396075 CUX2O14529 1486 aa15.97■□□□□ 0.15
LDHB-202ENST00000396075 BAZ1BQ9UIG0 1483 aaKnown RBP15.93■□□□□ 0.14
LDHB-202ENST00000396075 NESP48681 1621 aa15.92■□□□□ 0.14
LDHB-202ENST00000396075 PEG3Q9GZU2 1588 aa15.89■□□□□ 0.13
LDHB-202ENST00000396075 MROH2BQ7Z745 1585 aa15.84■□□□□ 0.13
LDHB-202ENST00000396075 THOC2Q8NI27 1593 aaKnown RBP15.76■□□□□ 0.11
LDHB-202ENST00000396075 KIF21AQ7Z4S6 1674 aa15.74■□□□□ 0.11
LDHB-202ENST00000396075 LAMC3Q9Y6N6 1575 aa15.74■□□□□ 0.11
LDHB-202ENST00000396075 PDS5BQ9NTI5 1447 aa15.71■□□□□ 0.11
LDHB-202ENST00000396075 CADPSQ9ULU8 1353 aa15.66■□□□□ 0.1
LDHB-202ENST00000396075 WIZO95785 1651 aa15.66■□□□□ 0.1
LDHB-202ENST00000396075 RSF1Q96T23 1441 aaPredicted RBP15.6■□□□□ 0.09
LDHB-202ENST00000396075 TOP2AP11388 1531 aaKnown RBP15.52■□□□□ 0.07
LDHB-202ENST00000396075 MRC2Q9UBG0 1479 aa15.48■□□□□ 0.07
LDHB-202ENST00000396075 CFTRP13569 1480 aa15.46■□□□□ 0.07
LDHB-202ENST00000396075 CEP164Q9UPV0 1460 aa15.46■□□□□ 0.07
LDHB-202ENST00000396075 WDR62O43379 1518 aa15.44■□□□□ 0.06
LDHB-202ENST00000396075 FANCD2Q9BXW9 1451 aa15.44■□□□□ 0.06
LDHB-202ENST00000396075 CCDC88BA6NC98 1476 aa15.34■□□□□ 0.05
LDHB-202ENST00000396075 MSH5O43196 834 aa15.33■□□□□ 0.04
LDHB-202ENST00000396075 ILDR1Q86SU0 546 aaPredicted RBP15.32■□□□□ 0.04
LDHB-202ENST00000396075 PRDM2Q13029 1718 aa15.29■□□□□ 0.04
LDHB-202ENST00000396075 URB2Q14146 1524 aaKnown RBP15.27■□□□□ 0.03
LDHB-202ENST00000396075 ABCC8Q09428 1581 aa15.25■□□□□ 0.03
LDHB-202ENST00000396075 PLPPR3Q6T4P5 718 aa15.22■□□□□ 0.03
LDHB-202ENST00000396075 OSCARQ8IYS5 282 aa15.22■□□□□ 0.03
LDHB-202ENST00000396075 IFT140Q96RY7 1462 aa15.17■□□□□ 0.02
LDHB-202ENST00000396075 RIMBP3CA6NJZ7 1639 aa15.16■□□□□ 0.02
LDHB-202ENST00000396075 RIMBP3BA6NNM3 1639 aa15.16■□□□□ 0.02
LDHB-202ENST00000396075 RIMBP3Q9UFD9 1639 aa15.16■□□□□ 0.02
LDHB-202ENST00000396075 TOPBP1Q92547 1522 aa15.13■□□□□ 0.01
LDHB-202ENST00000396075 ZNF608Q9ULD9 1512 aaPredicted RBP15.13■□□□□ 0.01
LDHB-202ENST00000396075 DNMBPQ6XZF7 1577 aa15.11■□□□□ 0.01
LDHB-202ENST00000396075 SUPT5HO00267 1087 aaKnown RBP15.1■□□□□ 0.01
LDHB-202ENST00000396075 POTEDQ86YR6 584 aa15.06■□□□□ 0
LDHB-202ENST00000396075 CHD1O14646 1710 aa15.03■□□□□ -0
LDHB-202ENST00000396075 EIF4G3O43432 1585 aaKnown RBP15.03■□□□□ -0
LDHB-202ENST00000396075 ARHGEF11O15085 1522 aa15.03■□□□□ -0
LDHB-202ENST00000396075 PIAS4Q8N2W9 510 aaPredicted RBP15.03■□□□□ -0
LDHB-202ENST00000396075 SOGA1O94964 1423 aa15□□□□□ -0.01
LDHB-202ENST00000396075 POLA1P09884 1462 aaPredicted RBP14.98□□□□□ -0.01
LDHB-202ENST00000396075 TRHP20396 242 aaPredicted RBP14.98□□□□□ -0.01
LDHB-202ENST00000396075 AQRO60306 1485 aaKnown RBP eCLIP14.96□□□□□ -0.01
LDHB-202ENST00000396075 FBLN2P98095 1184 aa14.95□□□□□ -0.02
LDHB-202ENST00000396075 CYB5RLQ6IPT4 315 aa14.95□□□□□ -0.02
LDHB-202ENST00000396075 TARBP1Q13395 1621 aaKnown RBP14.95□□□□□ -0.02
LDHB-202ENST00000396075 WDR97A6NE52 1622 aa14.92□□□□□ -0.02
LDHB-202ENST00000396075 FGD5Q6ZNL6 1462 aa14.91□□□□□ -0.02
LDHB-202ENST00000396075 RAD54L2Q9Y4B4 1467 aa14.91□□□□□ -0.02
LDHB-202ENST00000396075 TDRD9Q8NDG6 1382 aaKnown RBP14.9□□□□□ -0.02
LDHB-202ENST00000396075 CHMP7Q8WUX9 453 aaPredicted RBP14.89□□□□□ -0.03
LDHB-202ENST00000396075 ARAP1Q96P48 1450 aa14.89□□□□□ -0.03
LDHB-202ENST00000396075 CUX1P39880 1505 aa14.88□□□□□ -0.03
LDHB-202ENST00000396075 GRIN2BQ13224 1484 aa14.84□□□□□ -0.03
LDHB-202ENST00000396075 MAGI1Q96QZ7 1491 aaPredicted RBP14.82□□□□□ -0.04
LDHB-202ENST00000396075 WRNQ14191 1432 aaPredicted RBP eCLIP14.81□□□□□ -0.04
LDHB-202ENST00000396075 SNAPC4Q5SXM2 1469 aa14.81□□□□□ -0.04
LDHB-202ENST00000396075 GAPVD1Q14C86 1478 aa14.79□□□□□ -0.04
LDHB-202ENST00000396075 ABCA10Q8WWZ4 1543 aa14.78□□□□□ -0.04
LDHB-202ENST00000396075 SYNJ2O15056 1496 aa14.76□□□□□ -0.05
LDHB-202ENST00000396075 SYNJ1O43426 1573 aa14.76□□□□□ -0.05
LDHB-202ENST00000396075 PPP6R1Q9UPN7 881 aa14.74□□□□□ -0.05
LDHB-202ENST00000396075 CLASP1Q7Z460 1538 aa14.74□□□□□ -0.05
LDHB-202ENST00000396075 ADRA2BP18089 450 aa14.73□□□□□ -0.05
LDHB-202ENST00000396075 TOP2BQ02880 1626 aa14.73□□□□□ -0.05
LDHB-202ENST00000396075 PBRM1Q86U86 1689 aa14.71□□□□□ -0.05
LDHB-202ENST00000396075 BIVM-ERCC5R4GMW8 1640 aa14.7□□□□□ -0.06
LDHB-202ENST00000396075 ABCA5Q8WWZ7 1642 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms