RNA–Protein interactions for RNA: ENST00000478420.1

SMARCA1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 3

Gene SMARCA1, Length 561 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-204ENST00000478420 AEBP2Q6ZN18 517 aaPredicted RBP19.98■□□□□ 0.79
SMARCA1-204ENST00000478420 CHIC1Q5VXU3 224 aa19.68■□□□□ 0.74
SMARCA1-204ENST00000478420 PHF23Q9BUL5 403 aaPredicted RBP17.3■□□□□ 0.36
SMARCA1-204ENST00000478420 SENP3Q9H4L4 574 aaPredicted RBP16.99■□□□□ 0.31
SMARCA1-204ENST00000478420 PLPPR3Q6T4P5 718 aa16.07■□□□□ 0.16
SMARCA1-204ENST00000478420 FOXD1Q16676 465 aa15.72■□□□□ 0.11
SMARCA1-204ENST00000478420 POTEDQ86YR6 584 aa15.37■□□□□ 0.05
SMARCA1-204ENST00000478420 ADRA2BP18089 450 aa15.23■□□□□ 0.03
SMARCA1-204ENST00000478420 PPP6R1Q9UPN7 881 aa15.22■□□□□ 0.03
SMARCA1-204ENST00000478420 PIAS4Q8N2W9 510 aaPredicted RBP14.89□□□□□ -0.03
SMARCA1-204ENST00000478420 MSH5O43196 834 aa14.71□□□□□ -0.05
SMARCA1-204ENST00000478420 PPP4R3CPQ6ZMV5 832 aa14.16□□□□□ -0.14
SMARCA1-204ENST00000478420 SCAF1Q9H7N4 1312 aaKnown RBP13.99□□□□□ -0.17
SMARCA1-204ENST00000478420 KCNA4P22459 653 aa13.98□□□□□ -0.17
SMARCA1-204ENST00000478420 NCBP3Q53F19 620 aaKnown RBP13.87□□□□□ -0.19
SMARCA1-204ENST00000478420 MAPK8IP2Q13387 824 aaPredicted RBP13.77□□□□□ -0.21
SMARCA1-204ENST00000478420 CNKSR2Q8WXI2 1034 aa13.74□□□□□ -0.21
SMARCA1-204ENST00000478420 NPM3O75607 178 aaKnown RBP13.63□□□□□ -0.23
SMARCA1-204ENST00000478420 DMRT2Q9Y5R5 561 aa13.57□□□□□ -0.24
SMARCA1-204ENST00000478420 RNF216Q9NWF9 866 aaPredicted RBP13.44□□□□□ -0.26
SMARCA1-204ENST00000478420 SLC4A1APQ9BWU0 796 aaKnown RBP13.36□□□□□ -0.27
SMARCA1-204ENST00000478420 HOXD11P31277 338 aaPredicted RBP13.33□□□□□ -0.28
SMARCA1-204ENST00000478420 DNAJC5BQ9UF47 199 aa13.21□□□□□ -0.29
SMARCA1-204ENST00000478420 EHMT2Q96KQ7 1210 aa13.14□□□□□ -0.31
SMARCA1-204ENST00000478420 DCAF8L1A6NGE4 600 aa13.01□□□□□ -0.33
SMARCA1-204ENST00000478420 CACNB1Q02641 598 aaPredicted RBP13.01□□□□□ -0.33
SMARCA1-204ENST00000478420 CSRNP3Q8WYN3 585 aa12.9□□□□□ -0.34
SMARCA1-204ENST00000478420 FOXD4L1Q9NU39 408 aa12.85□□□□□ -0.35
SMARCA1-204ENST00000478420 ZBTB22O15209 634 aa12.84□□□□□ -0.35
SMARCA1-204ENST00000478420 SLC4A2P04920 1241 aa12.82□□□□□ -0.36
SMARCA1-204ENST00000478420 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.74□□□□□ -0.371e-9■□□□□ 11
SMARCA1-204ENST00000478420 MYCNP04198 464 aaPredicted RBP12.61□□□□□ -0.39
SMARCA1-204ENST00000478420 U3KPZ7 1027 aaPredicted RBP12.52□□□□□ -0.41
SMARCA1-204ENST00000478420 RNF39Q9H2S5 420 aa12.48□□□□□ -0.41
SMARCA1-204ENST00000478420 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.46□□□□□ -0.41
SMARCA1-204ENST00000478420 HNRNPUL2Q1KMD3 747 aaKnown RBP12.46□□□□□ -0.41
SMARCA1-204ENST00000478420 SAMD1Q6SPF0 538 aaPredicted RBP12.41□□□□□ -0.42
SMARCA1-204ENST00000478420 ATXN8OSP0DMR3 200 aa12.39□□□□□ -0.43
SMARCA1-204ENST00000478420 APLP2Q06481 763 aa12.31□□□□□ -0.44
SMARCA1-204ENST00000478420 C1QBPQ07021 282 aaKnown RBP12.28□□□□□ -0.44
SMARCA1-204ENST00000478420 ATF5Q9Y2D1 282 aaPredicted RBP12.21□□□□□ -0.45
SMARCA1-204ENST00000478420 SPINK5Q9NQ38 1064 aaPredicted RBP12.13□□□□□ -0.47
SMARCA1-204ENST00000478420 CAPN15O75808 1086 aa12.11□□□□□ -0.47
SMARCA1-204ENST00000478420 ZNF219Q9P2Y4 722 aaPredicted RBP12.09□□□□□ -0.47
SMARCA1-204ENST00000478420 TRHP20396 242 aaPredicted RBP12.08□□□□□ -0.48
SMARCA1-204ENST00000478420 POTEHQ6S545 545 aa11.93□□□□□ -0.5
SMARCA1-204ENST00000478420 POLA2Q14181 598 aa11.91□□□□□ -0.5
SMARCA1-204ENST00000478420 ABCB7O75027 752 aa11.87□□□□□ -0.51
SMARCA1-204ENST00000478420 DSG3P32926 999 aa11.84□□□□□ -0.51
SMARCA1-204ENST00000478420 FBLN2P98095 1184 aa11.76□□□□□ -0.53
SMARCA1-204ENST00000478420 ZBTB12Q9Y330 459 aaPredicted RBP11.75□□□□□ -0.53
SMARCA1-204ENST00000478420 MKRN4PQ13434 485 aaPredicted RBP11.7□□□□□ -0.54
SMARCA1-204ENST00000478420 FKBP8Q14318 412 aa11.68□□□□□ -0.54
SMARCA1-204ENST00000478420 SPDYE4A6NLX3 237 aa11.54□□□□□ -0.56
SMARCA1-204ENST00000478420 OSCARQ8IYS5 282 aa11.49□□□□□ -0.57
SMARCA1-204ENST00000478420 SPDYE2BA6NHP3 402 aa11.43□□□□□ -0.58
SMARCA1-204ENST00000478420 SPDYE6P0CI01 402 aa11.43□□□□□ -0.58
SMARCA1-204ENST00000478420 SPDYE2Q495Y8 402 aa11.43□□□□□ -0.58
SMARCA1-204ENST00000478420 ZNF692Q9BU19 519 aaPredicted RBP11.41□□□□□ -0.58
SMARCA1-204ENST00000478420 PROM2Q8N271 834 aa11.34□□□□□ -0.59
SMARCA1-204ENST00000478420 RBM42Q9BTD8 480 aaKnown RBP11.33□□□□□ -0.6
SMARCA1-204ENST00000478420 SSUH2Q9Y2M2 353 aa11.33□□□□□ -0.6
SMARCA1-204ENST00000478420 FBXO3Q9UK99 471 aa11.26□□□□□ -0.61
SMARCA1-204ENST00000478420 PABPN1Q86U42 306 aaKnown RBP eCLIP11.25□□□□□ -0.61
SMARCA1-204ENST00000478420 AKT1S1Q96B36 256 aa11.2□□□□□ -0.62
SMARCA1-204ENST00000478420 STAG3Q9UJ98 1225 aa11.12□□□□□ -0.63
SMARCA1-204ENST00000478420 VASPP50552 380 aaPredicted RBP11.07□□□□□ -0.64
SMARCA1-204ENST00000478420 REM2Q8IYK8 340 aaPredicted RBP11.07□□□□□ -0.64
SMARCA1-204ENST00000478420 SPDYE1Q8NFV5 336 aaPredicted RBP11.07□□□□□ -0.64
SMARCA1-204ENST00000478420 CLEC11AQ9Y240 323 aa11.01□□□□□ -0.65
SMARCA1-204ENST00000478420 CHRDL2Q6WN34 429 aa11□□□□□ -0.65
SMARCA1-204ENST00000478420 MIER1Q8N108 512 aa10.95□□□□□ -0.66
SMARCA1-204ENST00000478420 PLCD3Q8N3E9 789 aa10.95□□□□□ -0.66
SMARCA1-204ENST00000478420 PITPNM1O00562 1244 aa10.94□□□□□ -0.66
SMARCA1-204ENST00000478420 PRR29P0C7W0 189 aa10.93□□□□□ -0.66
SMARCA1-204ENST00000478420 PLEKHG5O94827 1062 aa10.91□□□□□ -0.66
SMARCA1-204ENST00000478420 IFNLR1Q8IU57 520 aaPredicted RBP10.91□□□□□ -0.66
SMARCA1-204ENST00000478420 AMER1Q5JTC6 1135 aaPredicted RBP10.9□□□□□ -0.66
SMARCA1-204ENST00000478420 SP7Q8TDD2 431 aaPredicted RBP10.9□□□□□ -0.66
SMARCA1-204ENST00000478420 KLHL34Q8N239 644 aa10.88□□□□□ -0.67
SMARCA1-204ENST00000478420 RTN4Q9NQC3 1192 aaKnown RBP10.84□□□□□ -0.67
SMARCA1-204ENST00000478420 ZBTB47Q9UFB7 747 aaPredicted RBP10.84□□□□□ -0.67
SMARCA1-204ENST00000478420 SPOCK2Q92563 424 aa10.79□□□□□ -0.68
SMARCA1-204ENST00000478420 CREBZFQ9NS37 354 aa10.79□□□□□ -0.68
SMARCA1-204ENST00000478420 FXR2P51116 673 aaKnown RBP eCLIP10.7□□□□□ -0.7
SMARCA1-204ENST00000478420 CHADLQ6NUI6 762 aa10.7□□□□□ -0.7
SMARCA1-204ENST00000478420 PRKAR2AP13861 404 aaKnown RBP10.68□□□□□ -0.7
SMARCA1-204ENST00000478420 MNX1P50219 401 aaPredicted RBP10.68□□□□□ -0.7
SMARCA1-204ENST00000478420 NPM1P06748 294 aaKnown RBP eCLIP10.66□□□□□ -0.7
SMARCA1-204ENST00000478420 PIP4P2Q8N4L2 257 aa10.65□□□□□ -0.7
SMARCA1-204ENST00000478420 FARP1Q9Y4F1 1045 aaPredicted RBP10.63□□□□□ -0.71
SMARCA1-204ENST00000478420 NUBP1P53384 320 aa10.61□□□□□ -0.71
SMARCA1-204ENST00000478420 CIZ1Q9ULV3 898 aaPredicted RBP10.61□□□□□ -0.71
SMARCA1-204ENST00000478420 PKD2Q13563 968 aa10.6□□□□□ -0.71
SMARCA1-204ENST00000478420 HAX1O00165 279 aa10.59□□□□□ -0.71
SMARCA1-204ENST00000478420 GSE1Q14687 1217 aa10.57□□□□□ -0.72
SMARCA1-204ENST00000478420 FAM212AQ96EL1 285 aa10.57□□□□□ -0.72
SMARCA1-204ENST00000478420 DCAF8Q5TAQ9 597 aa10.56□□□□□ -0.72
SMARCA1-204ENST00000478420 RASEFQ8IZ41 740 aa10.55□□□□□ -0.72
SMARCA1-204ENST00000478420 ECM2O94769 699 aaPredicted RBP10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 170.3 ms