RNA–Protein interactions for RNA: ENST00000478420.1

SMARCA1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 3

Gene SMARCA1, Length 561 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-204ENST00000478420 AEBP2Q6ZN18 517 aaPredicted RBP19.98■□□□□ 0.79
SMARCA1-204ENST00000478420 CHIC1Q5VXU3 224 aa19.68■□□□□ 0.74
SMARCA1-204ENST00000478420 PHF23Q9BUL5 403 aaPredicted RBP17.3■□□□□ 0.36
SMARCA1-204ENST00000478420 SENP3Q9H4L4 574 aaPredicted RBP16.99■□□□□ 0.31
SMARCA1-204ENST00000478420 PLPPR3Q6T4P5 718 aa16.07■□□□□ 0.16
SMARCA1-204ENST00000478420 FOXD1Q16676 465 aa15.72■□□□□ 0.11
SMARCA1-204ENST00000478420 POTEDQ86YR6 584 aa15.37■□□□□ 0.05
SMARCA1-204ENST00000478420 ADRA2BP18089 450 aa15.23■□□□□ 0.03
SMARCA1-204ENST00000478420 PPP6R1Q9UPN7 881 aa15.22■□□□□ 0.03
SMARCA1-204ENST00000478420 PIAS4Q8N2W9 510 aaPredicted RBP14.89□□□□□ -0.03
SMARCA1-204ENST00000478420 MSH5O43196 834 aa14.71□□□□□ -0.05
SMARCA1-204ENST00000478420 PPP4R3CPQ6ZMV5 832 aa14.16□□□□□ -0.14
SMARCA1-204ENST00000478420 SCAF1Q9H7N4 1312 aaKnown RBP13.99□□□□□ -0.17
SMARCA1-204ENST00000478420 KCNA4P22459 653 aa13.98□□□□□ -0.17
SMARCA1-204ENST00000478420 NCBP3Q53F19 620 aaKnown RBP13.87□□□□□ -0.19
SMARCA1-204ENST00000478420 MAPK8IP2Q13387 824 aaPredicted RBP13.77□□□□□ -0.21
SMARCA1-204ENST00000478420 CNKSR2Q8WXI2 1034 aa13.74□□□□□ -0.21
SMARCA1-204ENST00000478420 NPM3O75607 178 aaKnown RBP13.63□□□□□ -0.23
SMARCA1-204ENST00000478420 DMRT2Q9Y5R5 561 aa13.57□□□□□ -0.24
SMARCA1-204ENST00000478420 RNF216Q9NWF9 866 aaPredicted RBP13.44□□□□□ -0.26
SMARCA1-204ENST00000478420 SLC4A1APQ9BWU0 796 aaKnown RBP13.36□□□□□ -0.27
SMARCA1-204ENST00000478420 HOXD11P31277 338 aaPredicted RBP13.33□□□□□ -0.28
SMARCA1-204ENST00000478420 DNAJC5BQ9UF47 199 aa13.21□□□□□ -0.29
SMARCA1-204ENST00000478420 EHMT2Q96KQ7 1210 aa13.14□□□□□ -0.31
SMARCA1-204ENST00000478420 DCAF8L1A6NGE4 600 aa13.01□□□□□ -0.33
SMARCA1-204ENST00000478420 CACNB1Q02641 598 aaPredicted RBP13.01□□□□□ -0.33
SMARCA1-204ENST00000478420 CSRNP3Q8WYN3 585 aa12.9□□□□□ -0.34
SMARCA1-204ENST00000478420 FOXD4L1Q9NU39 408 aa12.85□□□□□ -0.35
SMARCA1-204ENST00000478420 ZBTB22O15209 634 aa12.84□□□□□ -0.35
SMARCA1-204ENST00000478420 SLC4A2P04920 1241 aa12.82□□□□□ -0.36
SMARCA1-204ENST00000478420 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.74□□□□□ -0.371e-9■□□□□ 11
SMARCA1-204ENST00000478420 MYCNP04198 464 aaPredicted RBP12.61□□□□□ -0.39
SMARCA1-204ENST00000478420 U3KPZ7 1027 aaPredicted RBP12.52□□□□□ -0.41
SMARCA1-204ENST00000478420 RNF39Q9H2S5 420 aa12.48□□□□□ -0.41
SMARCA1-204ENST00000478420 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.46□□□□□ -0.41
SMARCA1-204ENST00000478420 HNRNPUL2Q1KMD3 747 aaKnown RBP12.46□□□□□ -0.41
SMARCA1-204ENST00000478420 SAMD1Q6SPF0 538 aaPredicted RBP12.41□□□□□ -0.42
SMARCA1-204ENST00000478420 ATXN8OSP0DMR3 200 aa12.39□□□□□ -0.43
SMARCA1-204ENST00000478420 APLP2Q06481 763 aa12.31□□□□□ -0.44
SMARCA1-204ENST00000478420 C1QBPQ07021 282 aaKnown RBP12.28□□□□□ -0.44
SMARCA1-204ENST00000478420 ATF5Q9Y2D1 282 aaPredicted RBP12.21□□□□□ -0.45
SMARCA1-204ENST00000478420 SPINK5Q9NQ38 1064 aaPredicted RBP12.13□□□□□ -0.47
SMARCA1-204ENST00000478420 CAPN15O75808 1086 aa12.11□□□□□ -0.47
SMARCA1-204ENST00000478420 ZNF219Q9P2Y4 722 aaPredicted RBP12.09□□□□□ -0.47
SMARCA1-204ENST00000478420 TRHP20396 242 aaPredicted RBP12.08□□□□□ -0.48
SMARCA1-204ENST00000478420 POTEHQ6S545 545 aa11.93□□□□□ -0.5
SMARCA1-204ENST00000478420 POLA2Q14181 598 aa11.91□□□□□ -0.5
SMARCA1-204ENST00000478420 ABCB7O75027 752 aa11.87□□□□□ -0.51
SMARCA1-204ENST00000478420 DSG3P32926 999 aa11.84□□□□□ -0.51
SMARCA1-204ENST00000478420 FBLN2P98095 1184 aa11.76□□□□□ -0.53
SMARCA1-204ENST00000478420 ZBTB12Q9Y330 459 aaPredicted RBP11.75□□□□□ -0.53
SMARCA1-204ENST00000478420 MKRN4PQ13434 485 aaPredicted RBP11.7□□□□□ -0.54
SMARCA1-204ENST00000478420 FKBP8Q14318 412 aa11.68□□□□□ -0.54
SMARCA1-204ENST00000478420 SPDYE4A6NLX3 237 aa11.54□□□□□ -0.56
SMARCA1-204ENST00000478420 OSCARQ8IYS5 282 aa11.49□□□□□ -0.57
SMARCA1-204ENST00000478420 SPDYE2BA6NHP3 402 aa11.43□□□□□ -0.58
SMARCA1-204ENST00000478420 SPDYE6P0CI01 402 aa11.43□□□□□ -0.58
SMARCA1-204ENST00000478420 SPDYE2Q495Y8 402 aa11.43□□□□□ -0.58
SMARCA1-204ENST00000478420 ZNF692Q9BU19 519 aaPredicted RBP11.41□□□□□ -0.58
SMARCA1-204ENST00000478420 PROM2Q8N271 834 aa11.34□□□□□ -0.59
SMARCA1-204ENST00000478420 RBM42Q9BTD8 480 aaKnown RBP11.33□□□□□ -0.6
SMARCA1-204ENST00000478420 SSUH2Q9Y2M2 353 aa11.33□□□□□ -0.6
SMARCA1-204ENST00000478420 FBXO3Q9UK99 471 aa11.26□□□□□ -0.61
SMARCA1-204ENST00000478420 PABPN1Q86U42 306 aaKnown RBP eCLIP11.25□□□□□ -0.61
SMARCA1-204ENST00000478420 AKT1S1Q96B36 256 aa11.2□□□□□ -0.62
SMARCA1-204ENST00000478420 STAG3Q9UJ98 1225 aa11.12□□□□□ -0.63
SMARCA1-204ENST00000478420 VASPP50552 380 aaPredicted RBP11.07□□□□□ -0.64
SMARCA1-204ENST00000478420 REM2Q8IYK8 340 aaPredicted RBP11.07□□□□□ -0.64
SMARCA1-204ENST00000478420 SPDYE1Q8NFV5 336 aaPredicted RBP11.07□□□□□ -0.64
SMARCA1-204ENST00000478420 CLEC11AQ9Y240 323 aa11.01□□□□□ -0.65
SMARCA1-204ENST00000478420 CHRDL2Q6WN34 429 aa11□□□□□ -0.65
SMARCA1-204ENST00000478420 MIER1Q8N108 512 aa10.95□□□□□ -0.66
SMARCA1-204ENST00000478420 PLCD3Q8N3E9 789 aa10.95□□□□□ -0.66
SMARCA1-204ENST00000478420 PITPNM1O00562 1244 aa10.94□□□□□ -0.66
SMARCA1-204ENST00000478420 PRR29P0C7W0 189 aa10.93□□□□□ -0.66
SMARCA1-204ENST00000478420 PLEKHG5O94827 1062 aa10.91□□□□□ -0.66
SMARCA1-204ENST00000478420 IFNLR1Q8IU57 520 aaPredicted RBP10.91□□□□□ -0.66
SMARCA1-204ENST00000478420 AMER1Q5JTC6 1135 aaPredicted RBP10.9□□□□□ -0.66
SMARCA1-204ENST00000478420 SP7Q8TDD2 431 aaPredicted RBP10.9□□□□□ -0.66
SMARCA1-204ENST00000478420 KLHL34Q8N239 644 aa10.88□□□□□ -0.67
SMARCA1-204ENST00000478420 RTN4Q9NQC3 1192 aaKnown RBP10.84□□□□□ -0.67
SMARCA1-204ENST00000478420 ZBTB47Q9UFB7 747 aaPredicted RBP10.84□□□□□ -0.67
SMARCA1-204ENST00000478420 SPOCK2Q92563 424 aa10.79□□□□□ -0.68
SMARCA1-204ENST00000478420 CREBZFQ9NS37 354 aa10.79□□□□□ -0.68
SMARCA1-204ENST00000478420 FXR2P51116 673 aaKnown RBP eCLIP10.7□□□□□ -0.7
SMARCA1-204ENST00000478420 CHADLQ6NUI6 762 aa10.7□□□□□ -0.7
SMARCA1-204ENST00000478420 PRKAR2AP13861 404 aaKnown RBP10.68□□□□□ -0.7
SMARCA1-204ENST00000478420 MNX1P50219 401 aaPredicted RBP10.68□□□□□ -0.7
SMARCA1-204ENST00000478420 NPM1P06748 294 aaKnown RBP eCLIP10.66□□□□□ -0.7
SMARCA1-204ENST00000478420 PIP4P2Q8N4L2 257 aa10.65□□□□□ -0.7
SMARCA1-204ENST00000478420 FARP1Q9Y4F1 1045 aaPredicted RBP10.63□□□□□ -0.71
SMARCA1-204ENST00000478420 NUBP1P53384 320 aa10.61□□□□□ -0.71
SMARCA1-204ENST00000478420 CIZ1Q9ULV3 898 aaPredicted RBP10.61□□□□□ -0.71
SMARCA1-204ENST00000478420 PKD2Q13563 968 aa10.6□□□□□ -0.71
SMARCA1-204ENST00000478420 HAX1O00165 279 aa10.59□□□□□ -0.71
SMARCA1-204ENST00000478420 GSE1Q14687 1217 aa10.57□□□□□ -0.72
SMARCA1-204ENST00000478420 FAM212AQ96EL1 285 aa10.57□□□□□ -0.72
SMARCA1-204ENST00000478420 DCAF8Q5TAQ9 597 aa10.56□□□□□ -0.72
SMARCA1-204ENST00000478420 RASEFQ8IZ41 740 aa10.55□□□□□ -0.72
SMARCA1-204ENST00000478420 ECM2O94769 699 aaPredicted RBP10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms