Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 ETF1-209ENST00000572514 990 ntTSL 520.29■□□□□ 0.847e-6■□□□□ 10.9
LIN28BQ6ZN17 NOC2L-204ENST00000483767 1611 ntTSL 220.08■□□□□ 0.87e-6■□□□□ 10.9
LIN28BQ6ZN17 TMEM256-PLSCR3-201ENST00000570569 562 ntAPPRIS P5 TSL 319.28■□□□□ 0.684e-6■□□□□ 10.9
LIN28BQ6ZN17 CAPZA2-202ENST00000414148 360 ntTSL 519.15■□□□□ 0.667e-6■□□□□ 10.9
LIN28BQ6ZN17 SP100-208ENST00000427101 1922 ntTSL 2 BASIC19.12■□□□□ 0.657e-6■□□□□ 10.9
LIN28BQ6ZN17 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.657e-6■□□□□ 10.9
LIN28BQ6ZN17 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.95■□□□□ 0.627e-6■□□□□ 10.9
LIN28BQ6ZN17 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.617e-6■□□□□ 10.9
LIN28BQ6ZN17 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.67e-6■□□□□ 10.9
LIN28BQ6ZN17 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC18.78■□□□□ 0.67e-6■□□□□ 10.9
LIN28BQ6ZN17 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.45■□□□□ 0.547e-6■□□□□ 10.9
LIN28BQ6ZN17 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC18.32■□□□□ 0.527e-6■□□□□ 10.9
LIN28BQ6ZN17 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.14■□□□□ 0.497e-6■□□□□ 10.9
LIN28BQ6ZN17 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.9■□□□□ 0.467e-6■□□□□ 10.9
LIN28BQ6ZN17 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.76■□□□□ 0.437e-6■□□□□ 10.9
LIN28BQ6ZN17 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.67■□□□□ 0.422e-7■□□□□ 10.9
LIN28BQ6ZN17 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.417e-6■□□□□ 10.9
LIN28BQ6ZN17 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.47e-6■□□□□ 10.9
LIN28BQ6ZN17 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.45■□□□□ 0.382e-7■□□□□ 10.9
LIN28BQ6ZN17 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.367e-6■□□□□ 10.9
LIN28BQ6ZN17 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC17.02■□□□□ 0.327e-6■□□□□ 10.9
LIN28BQ6ZN17 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.317e-6■□□□□ 10.9
LIN28BQ6ZN17 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC16.92■□□□□ 0.37e-6■□□□□ 10.9
LIN28BQ6ZN17 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.37e-6■□□□□ 10.9
LIN28BQ6ZN17 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.86■□□□□ 0.297e-6■□□□□ 10.9
LIN28BQ6ZN17 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.69■□□□□ 0.267e-6■□□□□ 10.9
LIN28BQ6ZN17 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.69■□□□□ 0.267e-6■□□□□ 10.9
LIN28BQ6ZN17 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.69■□□□□ 0.267e-6■□□□□ 10.9
LIN28BQ6ZN17 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.224e-6■□□□□ 10.9
LIN28BQ6ZN17 SP100-210ENST00000432979 654 ntTSL 316.44■□□□□ 0.227e-6■□□□□ 10.9
LIN28BQ6ZN17 MECP2-211ENST00000496908 342 ntTSL 1 (best)15.86■□□□□ 0.137e-6■□□□□ 10.9
LIN28BQ6ZN17 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC15.75■□□□□ 0.117e-6■□□□□ 10.9
LIN28BQ6ZN17 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.097e-6■□□□□ 10.9
LIN28BQ6ZN17 HACD3-208ENST00000566239 393 ntTSL 215.27■□□□□ 0.042e-7■□□□□ 10.9
LIN28BQ6ZN17 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC15.08■□□□□ 07e-6■□□□□ 10.9
LIN28BQ6ZN17 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC14.92□□□□□ -0.027e-6■□□□□ 10.9
LIN28BQ6ZN17 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.037e-6■□□□□ 10.9
LIN28BQ6ZN17 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC14.75□□□□□ -0.057e-6■□□□□ 10.9
LIN28BQ6ZN17 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.64□□□□□ -0.077e-6■□□□□ 10.9
LIN28BQ6ZN17 TMEM256-202ENST00000575427 403 ntTSL 214.4□□□□□ -0.14e-6■□□□□ 10.9
LIN28BQ6ZN17 DEGS1-202ENST00000391877 1345 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.147e-6■□□□□ 10.9
LIN28BQ6ZN17 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.157e-6■□□□□ 10.9
LIN28BQ6ZN17 ACTR1A-207ENST00000636707 1046 ntTSL 514.11□□□□□ -0.157e-6■□□□□ 10.9
LIN28BQ6ZN17 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.167e-6■□□□□ 10.9
LIN28BQ6ZN17 MECP2-226ENST00000640414 897 ntTSL 5 BASIC13.59□□□□□ -0.237e-6■□□□□ 10.9
LIN28BQ6ZN17 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.247e-6■□□□□ 10.9
LIN28BQ6ZN17 PTGES3-206ENST00000537473 2939 ntTSL 213.48□□□□□ -0.257e-6■□□□□ 10.9
LIN28BQ6ZN17 SP100-203ENST00000409112 2198 ntTSL 1 (best) BASIC13.35□□□□□ -0.277e-6■□□□□ 10.9
LIN28BQ6ZN17 FOXD2-AS1-201ENST00000445551 2509 ntBASIC13.15□□□□□ -0.37e-6■□□□□ 10.9
LIN28BQ6ZN17 RBAK-201ENST00000353796 4125 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.327e-6■□□□□ 10.9
LIN28BQ6ZN17 NOC2L-206ENST00000496938 149 ntTSL 512.76□□□□□ -0.377e-6■□□□□ 10.9
LIN28BQ6ZN17 UFC1-201ENST00000368003 1114 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.397e-6■□□□□ 10.9
LIN28BQ6ZN17 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.477e-6■□□□□ 10.9
LIN28BQ6ZN17 TAOK2-201ENST00000279394 4246 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.487e-6■□□□□ 10.9
LIN28BQ6ZN17 MECP2-212ENST00000611468 603 ntTSL 5 BASIC12.01□□□□□ -0.497e-6■□□□□ 10.9
LIN28BQ6ZN17 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC11.93□□□□□ -0.57e-6■□□□□ 10.9
LIN28BQ6ZN17 ACTR1A-201ENST00000369905 2829 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.557e-6■□□□□ 10.9
LIN28BQ6ZN17 PRR11-203ENST00000578542 2334 ntTSL 511.34□□□□□ -0.597e-6■□□□□ 10.9
LIN28BQ6ZN17 TTC33-202ENST00000503936 1707 ntTSL 1 (best)11.13□□□□□ -0.637e-6■□□□□ 10.9
LIN28BQ6ZN17 ACTR1A-205ENST00000487599 2726 ntTSL 5 BASIC11.01□□□□□ -0.657e-6■□□□□ 10.9
LIN28BQ6ZN17 PRR11-209ENST00000614081 1623 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.677e-6■□□□□ 10.9
LIN28BQ6ZN17 CORO1C-209ENST00000547361 683 ntTSL 210.78□□□□□ -0.687e-6■□□□□ 10.9
LIN28BQ6ZN17 PPWD1-213ENST00000515447 580 ntTSL 410.75□□□□□ -0.697e-6■□□□□ 10.9
LIN28BQ6ZN17 CAPZA2-201ENST00000361183 5182 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.77e-6■□□□□ 10.9
LIN28BQ6ZN17 MECP2-202ENST00000369957 784 ntTSL 310.7□□□□□ -0.77e-6■□□□□ 10.9
LIN28BQ6ZN17 CAPZA2-211ENST00000484325 324 ntTSL 1 (best)10.67□□□□□ -0.77e-6■□□□□ 10.9
LIN28BQ6ZN17 SP100-202ENST00000340126 2926 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.727e-6■□□□□ 10.9
LIN28BQ6ZN17 PPWD1-203ENST00000503435 592 ntTSL 410.49□□□□□ -0.737e-6■□□□□ 10.9
LIN28BQ6ZN17 SP100-206ENST00000409897 2037 ntTSL 2 BASIC10.39□□□□□ -0.757e-6■□□□□ 10.9
LIN28BQ6ZN17 SRCAP-205ENST00000483083 5937 ntTSL 210.29□□□□□ -0.767e-6■□□□□ 10.9
LIN28BQ6ZN17 SERINC1-201ENST00000339697 3137 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.773e-7■□□□□ 10.9
LIN28BQ6ZN17 SEPT6-203ENST00000354416 4652 ntAPPRIS ALT1 TSL 5 BASIC9.96□□□□□ -0.827e-6■□□□□ 10.9
LIN28BQ6ZN17 SEPT6-205ENST00000394610 4694 ntAPPRIS ALT1 TSL 1 (best) BASIC9.96□□□□□ -0.827e-6■□□□□ 10.9
LIN28BQ6ZN17 TMEM256-203ENST00000576017 511 ntTSL 39.69□□□□□ -0.864e-6■□□□□ 10.9
LIN28BQ6ZN17 GTPBP4-205ENST00000491635 2220 ntTSL 29.57□□□□□ -0.887e-6■□□□□ 10.9
LIN28BQ6ZN17 ACTR1A-206ENST00000494549 520 ntTSL 29.54□□□□□ -0.887e-6■□□□□ 10.9
LIN28BQ6ZN17 MECP2-201ENST00000303391 10505 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.887e-6■□□□□ 10.9
LIN28BQ6ZN17 SP100-201ENST00000264052 3882 ntTSL 1 (best) BASIC9.51□□□□□ -0.897e-6■□□□□ 10.9
LIN28BQ6ZN17 ACTR1A-202ENST00000470322 3519 ntTSL 29.25□□□□□ -0.937e-6■□□□□ 10.9
LIN28BQ6ZN17 TTC33-205ENST00000636106 2252 ntTSL 5 BASIC9.24□□□□□ -0.937e-6■□□□□ 10.9
LIN28BQ6ZN17 MECP2-220ENST00000631210 490 ntTSL 1 (best)9.12□□□□□ -0.957e-6■□□□□ 10.9
LIN28BQ6ZN17 PRR11-205ENST00000580177 1641 ntTSL 1 (best)9.07□□□□□ -0.967e-6■□□□□ 10.9
LIN28BQ6ZN17 ETF1-207ENST00000512198 745 ntTSL 59.01□□□□□ -0.977e-6■□□□□ 10.9
LIN28BQ6ZN17 MECP2-204ENST00000415944 413 ntTSL 58.96□□□□□ -0.987e-6■□□□□ 10.9
LIN28BQ6ZN17 PRR11-201ENST00000262293 2332 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.017e-6■□□□□ 10.9
LIN28BQ6ZN17 TTC33-201ENST00000337702 2612 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.057e-6■□□□□ 10.9
LIN28BQ6ZN17 TTC33-207ENST00000637375 1824 ntTSL 5 BASIC8.1□□□□□ -1.117e-6■□□□□ 10.9
LIN28BQ6ZN17 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.187e-6■□□□□ 10.9
LIN28BQ6ZN17 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC7.01□□□□□ -1.297e-6■□□□□ 10.9
LIN28BQ6ZN17 RBBP7-206ENST00000425696 373 ntTSL 56.86□□□□□ -1.317e-6■□□□□ 10.9
LIN28BQ6ZN17 TSG101-212ENST00000584526 912 ntTSL 56.63□□□□□ -1.357e-6■□□□□ 10.9
LIN28BQ6ZN17 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC6.58□□□□□ -1.367e-6■□□□□ 10.9
LIN28BQ6ZN17 PRKCB-204ENST00000466124 536 ntTSL 36.51□□□□□ -1.371e-10■□□□□ 10.9
LIN28BQ6ZN17 DEGS1-205ENST00000498813 358 ntTSL 26.49□□□□□ -1.377e-6■□□□□ 10.9
LIN28BQ6ZN17 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.387e-6■□□□□ 10.9
LIN28BQ6ZN17 MECP2-219ENST00000630151 322 ntTSL 56.39□□□□□ -1.397e-6■□□□□ 10.9
LIN28BQ6ZN17 PPWD1-202ENST00000502703 570 ntTSL 46.32□□□□□ -1.47e-6■□□□□ 10.9
LIN28BQ6ZN17 RBBP7-208ENST00000465244 4031 ntTSL 26.15□□□□□ -1.427e-6■□□□□ 10.9
LIN28BQ6ZN17 TBK1-202ENST00000536906 756 ntTSL 55.57□□□□□ -1.527e-6■□□□□ 10.9
LIN28BQ6ZN17 NGLY1-210ENST00000467224 722 ntTSL 35.53□□□□□ -1.527e-6■□□□□ 10.9
Retrieved 100 of 21,972 protein–RNA pairs in 744.1 ms