RNA–Protein interactions for RNA: ENST00000415944.3

MECP2-204, Transcript of methyl-CpG binding protein 2, humanhuman

TSL 5

Gene MECP2, Length 413 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MECP2-204ENST00000415944 NISCHQ9Y2I1 1504 aa19.64■□□□□ 0.73
MECP2-204ENST00000415944 CCDC180Q9P1Z9 1646 aa17.44■□□□□ 0.38
MECP2-204ENST00000415944 ABCC9O60706 1549 aa16.75■□□□□ 0.27
MECP2-204ENST00000415944 ZCCHC6Q5VYS8 1495 aaKnown RBP16.43■□□□□ 0.22
MECP2-204ENST00000415944 MYO15BQ96JP2 1530 aa16.31■□□□□ 0.2
MECP2-204ENST00000415944 DCAF1Q9Y4B6 1507 aa16.31■□□□□ 0.2
MECP2-204ENST00000415944 NACADO15069 1562 aa16.3■□□□□ 0.2
MECP2-204ENST00000415944 RB1CC1Q8TDY2 1594 aa16.26■□□□□ 0.19
MECP2-204ENST00000415944 DCAF8L2P0C7V8 631 aa16.15■□□□□ 0.18
MECP2-204ENST00000415944 UNC13AQ9UPW8 1703 aa15.96■□□□□ 0.15
MECP2-204ENST00000415944 SCRIBQ14160 1630 aa15.86■□□□□ 0.13
MECP2-204ENST00000415944 BICRAQ9NZM4 1560 aa15.79■□□□□ 0.12
MECP2-204ENST00000415944 SHROOM4Q9ULL8 1493 aa15.67■□□□□ 0.1
MECP2-204ENST00000415944 PABPN1Q86U42 306 aaKnown RBP eCLIP15.64■□□□□ 0.09
MECP2-204ENST00000415944 EIF4G1Q04637 1599 aaKnown RBP15.33■□□□□ 0.05
MECP2-204ENST00000415944 CECR2Q9BXF3 1484 aa15.26■□□□□ 0.03
MECP2-204ENST00000415944 SMARCA4P51532 1647 aa15.22■□□□□ 0.03
MECP2-204ENST00000415944 BAZ1AQ9NRL2 1556 aaPredicted RBP15.22■□□□□ 0.03
MECP2-204ENST00000415944 CC2D2AQ9P2K1 1620 aa15.21■□□□□ 0.03
MECP2-204ENST00000415944 DNAJC5BQ9UF47 199 aa15.16■□□□□ 0.02
MECP2-204ENST00000415944 MROH2BQ7Z745 1585 aa15.13■□□□□ 0.01
MECP2-204ENST00000415944 PEG3Q9GZU2 1588 aa15.1■□□□□ 0.01
MECP2-204ENST00000415944 SMARCA2P51531 1590 aa15.07■□□□□ 0
MECP2-204ENST00000415944 ATAD2BQ9ULI0 1458 aa15.06■□□□□ 0
MECP2-204ENST00000415944 NCAPD3P42695 1498 aa15.02■□□□□ -0
MECP2-204ENST00000415944 RSF1Q96T23 1441 aaPredicted RBP15.02■□□□□ -0
MECP2-204ENST00000415944 HMGXB3Q12766 1538 aa15.01□□□□□ -0.01
MECP2-204ENST00000415944 WIZO95785 1651 aa14.99□□□□□ -0.01
MECP2-204ENST00000415944 BAZ1BQ9UIG0 1483 aaKnown RBP14.93□□□□□ -0.02
MECP2-204ENST00000415944 TOP2AP11388 1531 aaKnown RBP14.86□□□□□ -0.03
MECP2-204ENST00000415944 SUPT5HO00267 1087 aaKnown RBP14.76□□□□□ -0.05
MECP2-204ENST00000415944 CCDC88BA6NC98 1476 aa14.64□□□□□ -0.07
MECP2-204ENST00000415944 LAMC3Q9Y6N6 1575 aa14.61□□□□□ -0.07
MECP2-204ENST00000415944 NESP48681 1621 aa14.57□□□□□ -0.08
MECP2-204ENST00000415944 CADPSQ9ULU8 1353 aa14.57□□□□□ -0.08
MECP2-204ENST00000415944 PRDM2Q13029 1718 aa14.55□□□□□ -0.08
MECP2-204ENST00000415944 CFTRP13569 1480 aa14.55□□□□□ -0.08
MECP2-204ENST00000415944 KIF21AQ7Z4S6 1674 aa14.46□□□□□ -0.09
MECP2-204ENST00000415944 PDS5BQ9NTI5 1447 aa14.46□□□□□ -0.09
MECP2-204ENST00000415944 CHIC1Q5VXU3 224 aa14.42□□□□□ -0.1
MECP2-204ENST00000415944 ERCC6Q03468 1493 aa14.42□□□□□ -0.1
MECP2-204ENST00000415944 FANCD2Q9BXW9 1451 aa14.41□□□□□ -0.1
MECP2-204ENST00000415944 CEP164Q9UPV0 1460 aa14.38□□□□□ -0.11
MECP2-204ENST00000415944 THOC2Q8NI27 1593 aaKnown RBP14.38□□□□□ -0.11
MECP2-204ENST00000415944 MRC2Q9UBG0 1479 aa14.32□□□□□ -0.12
MECP2-204ENST00000415944 WDR62O43379 1518 aa14.3□□□□□ -0.12
MECP2-204ENST00000415944 URB2Q14146 1524 aaKnown RBP14.27□□□□□ -0.12
MECP2-204ENST00000415944 CUX2O14529 1486 aa14.25□□□□□ -0.13
MECP2-204ENST00000415944 DNMBPQ6XZF7 1577 aa14.24□□□□□ -0.13
MECP2-204ENST00000415944 ABCC8Q09428 1581 aa14.22□□□□□ -0.13
MECP2-204ENST00000415944 TOPBP1Q92547 1522 aa14.22□□□□□ -0.13
MECP2-204ENST00000415944 CUX1P39880 1505 aa14.2□□□□□ -0.14
MECP2-204ENST00000415944 BIVM-ERCC5R4GMW8 1640 aa14.16□□□□□ -0.14
MECP2-204ENST00000415944 TOP2BQ02880 1626 aa14.15□□□□□ -0.14
MECP2-204ENST00000415944 WRNQ14191 1432 aaPredicted RBP eCLIP14.15□□□□□ -0.14
MECP2-204ENST00000415944 SYNJ1O43426 1573 aa14.14□□□□□ -0.15
MECP2-204ENST00000415944 POLA1P09884 1462 aaPredicted RBP14.12□□□□□ -0.15
MECP2-204ENST00000415944 FGD5Q6ZNL6 1462 aa14.1□□□□□ -0.15
MECP2-204ENST00000415944 TARBP1Q13395 1621 aaKnown RBP14.08□□□□□ -0.16
MECP2-204ENST00000415944 IFT140Q96RY7 1462 aa14.07□□□□□ -0.16
MECP2-204ENST00000415944 WDR97A6NE52 1622 aa14.05□□□□□ -0.16
MECP2-204ENST00000415944 TRIM41Q8WV44 630 aa14.03□□□□□ -0.16
MECP2-204ENST00000415944 RAD54L2Q9Y4B4 1467 aa14.01□□□□□ -0.17
MECP2-204ENST00000415944 SOGA1O94964 1423 aa14.01□□□□□ -0.17
MECP2-204ENST00000415944 ABCA10Q8WWZ4 1543 aa14□□□□□ -0.17
MECP2-204ENST00000415944 ZNF608Q9ULD9 1512 aaPredicted RBP13.98□□□□□ -0.17
MECP2-204ENST00000415944 EIF4G3O43432 1585 aaKnown RBP13.97□□□□□ -0.17
MECP2-204ENST00000415944 ABCA5Q8WWZ7 1642 aa13.95□□□□□ -0.18
MECP2-204ENST00000415944 AQRO60306 1485 aaKnown RBP eCLIP13.9□□□□□ -0.18
MECP2-204ENST00000415944 PBRM1Q86U86 1689 aa13.9□□□□□ -0.18
MECP2-204ENST00000415944 TDRD9Q8NDG6 1382 aaKnown RBP13.89□□□□□ -0.19
MECP2-204ENST00000415944 EEA1Q15075 1411 aa13.89□□□□□ -0.19
MECP2-204ENST00000415944 GAPVD1Q14C86 1478 aa13.88□□□□□ -0.19
MECP2-204ENST00000415944 GRIN2BQ13224 1484 aa13.86□□□□□ -0.19
MECP2-204ENST00000415944 ERICH3Q5RHP9 1530 aa13.84□□□□□ -0.19
MECP2-204ENST00000415944 KIF27Q86VH2 1401 aa13.83□□□□□ -0.2
MECP2-204ENST00000415944 MAGI1Q96QZ7 1491 aaPredicted RBP13.82□□□□□ -0.2
MECP2-204ENST00000415944 SNAPC4Q5SXM2 1469 aa13.81□□□□□ -0.2
MECP2-204ENST00000415944 ADAMTS12P58397 1594 aa13.79□□□□□ -0.2
MECP2-204ENST00000415944 CHD1O14646 1710 aa13.77□□□□□ -0.21
MECP2-204ENST00000415944 CUL7Q14999 1698 aa13.77□□□□□ -0.21
MECP2-204ENST00000415944 RUSC2Q8N2Y8 1516 aa13.76□□□□□ -0.21
MECP2-204ENST00000415944 SYNJ2O15056 1496 aa13.74□□□□□ -0.21
MECP2-204ENST00000415944 IGF1RP08069 1367 aa13.74□□□□□ -0.21
MECP2-204ENST00000415944 FHAD1B1AJZ9 1412 aa13.73□□□□□ -0.21
MECP2-204ENST00000415944 LOC105371045A0A1W2PR82 267 aa13.69□□□□□ -0.22
MECP2-204ENST00000415944 GRIN2AQ12879 1464 aa13.68□□□□□ -0.22
MECP2-204ENST00000415944 CARMIL1Q5VZK9 1371 aa13.67□□□□□ -0.22
MECP2-204ENST00000415944 TRIM26Q12899 539 aaPredicted RBP13.66□□□□□ -0.22
MECP2-204ENST00000415944 CHMP7Q8WUX9 453 aaPredicted RBP13.65□□□□□ -0.22
MECP2-204ENST00000415944 PRXQ9BXM0 1461 aa13.65□□□□□ -0.22
MECP2-204ENST00000415944 NUP160Q12769 1436 aa13.64□□□□□ -0.23
MECP2-204ENST00000415944 RAPGEF2Q9Y4G8 1499 aa13.63□□□□□ -0.23
MECP2-204ENST00000415944 CEP170Q5SW79 1584 aa13.62□□□□□ -0.23
MECP2-204ENST00000415944 FBLN2P98095 1184 aa13.62□□□□□ -0.23
MECP2-204ENST00000415944 CLASP1Q7Z460 1538 aa13.62□□□□□ -0.23
MECP2-204ENST00000415944 OSCARQ8IYS5 282 aa13.61□□□□□ -0.23
MECP2-204ENST00000415944 CSRNP3Q8WYN3 585 aa13.61□□□□□ -0.23
MECP2-204ENST00000415944 KIF21BO75037 1637 aa13.61□□□□□ -0.23
MECP2-204ENST00000415944 TNIKQ9UKE5 1360 aa13.58□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms